Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g17
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1472 - 26753070-26753177,26753254-26753531,26753691-267538...    44   1e-04
08_02_0800 + 21330446-21330722,21331040-21331182,21331925-213319...    29   2.3  
06_01_0599 - 4327671-4330034                                           27   9.4  
03_02_0660 + 10244962-10245606                                         27   9.4  

>07_03_1472 -
           26753070-26753177,26753254-26753531,26753691-26753865,
           26754974-26755468
          Length = 351

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 250 KRFYKGTAVIQND--NKWEVTLDHRRLKTPNGNVLTVGNEPLARVVAVEWDSQ 402
           KRFY+   V + D  N W V LD+R LK+P    L + +  LA  +A EW+ Q
Sbjct: 83  KRFYREATVRRADDGNGWSVMLDYRTLKSPAKRPLKLQSRTLAMAIAAEWEYQ 135


>08_02_0800 +
           21330446-21330722,21331040-21331182,21331925-21331978,
           21332065-21332130,21333075-21333096,21333347-21333460,
           21334153-21334278,21334891-21334925,21335709-21335809,
           21335911-21335971,21336482-21336572,21337657-21337842,
           21338755-21338922,21339006-21339208,21339313-21339431,
           21339910-21339928,21340092-21340130,21340238-21340465,
           21340987-21341088,21341842-21341889,21343622-21343765,
           21343873-21343968,21344224-21344325,21345188-21345274
          Length = 876

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +1

Query: 352 VGNEPLARVVAVEWDSQNETISQATMHLTALCNTALDNPGKLTSHDIVNYLLEHYPTDTL 531
           VG +PL +++AV+W   +E      +H  +L  +  +   K+    ++N  +   P   L
Sbjct: 686 VGGDPLLKLIAVDWFKADERFDSVALHPKSLVQS--EAAKKIPFILVINLQVPAKPNYNL 743

Query: 532 LFY 540
           + Y
Sbjct: 744 VMY 746


>06_01_0599 - 4327671-4330034
          Length = 787

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 244 TRKRFYKGTAVIQNDNKWEVTLDHRRLKTPNGNVLTVGNEPLARVVAVEWDSQNETISQA 423
           T K+ Y   AV++ + K       + +KTP   ++ +GN+P   +       Q+E I   
Sbjct: 629 TSKKQYSEAAVVRQEAK-----SRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSY 683

Query: 424 TMHLTA 441
              LTA
Sbjct: 684 LEKLTA 689


>03_02_0660 + 10244962-10245606
          Length = 214

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 481 MSISRDCPEQYYTMRSNAWW 422
           MS S+  P+Q+   R+N WW
Sbjct: 1   MSSSKPSPQQHQQQRANEWW 20


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,742,464
Number of Sequences: 37544
Number of extensions: 311147
Number of successful extensions: 714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)