Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g17
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32017| Best HMM Match : ATP12 (HMM E-Value=1.6e-05)                 56   3e-08
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13)       29   4.2  
SB_5902| Best HMM Match : No HMM Matches (HMM E-Value=.)               24   5.0  
SB_17803| Best HMM Match : SRCR (HMM E-Value=0)                        28   5.5  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   7.3  
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_32017| Best HMM Match : ATP12 (HMM E-Value=1.6e-05)
          Length = 123

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
 Frame = +1

Query: 379 VAVEWDSQNETISQATMHLTALCNTALDNPGKLTSHDIVNYLLEHYPTDT------LLFY 540
           +A EW+ Q  TI  A+MHLT+L NT +D P + +    +  +LE+  TDT      L F 
Sbjct: 1   MASEWNMQTGTIKPASMHLTSLANTVIDKPSECSKDQRIEDILEYLYTDTVRYMYFLDFP 60

Query: 541 SXXXXXXXXXXXXKWTPILDWFQKTFNV 624
           +            +W P++ WF   F V
Sbjct: 61  ASDPDDLVELQKTEWGPLISWFSSRFGV 88


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
 Frame = +1

Query: 184  GISTLLKTRCTLCSIYRPYATRKRFYKGTAVIQNDNKWEVTLDHRRLKTPNGNVLTVGNE 363
            G S+  ++   L S+ R      ++ K  ++IQ  +K+E+     +L +  G   T+G E
Sbjct: 3888 GGSSPRESGSVLASVERFDPKYNKWEKMESLIQARSKFELAEVEGKLYSIGG---TIGGE 3944

Query: 364  PLARVVAVE-WDSQNET-ISQATMH-LTALCNTAL 459
            PL R  AVE +D  N T  S+A  H L   C+TA+
Sbjct: 3945 PLTRDNAVECYDQVNNTWSSRAAPHQLRHFCSTAV 3979


>SB_35903| Best HMM Match : Carn_acyltransf (HMM E-Value=1.9e-13)
          Length = 507

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 297 GSDFGSSTSKNTKWECINRWE*TSCSCCCCRMGFTK*NNFTSHHAFDRIV 446
           G D+   T  +   +C NRW   S +   C+MG    N    H  FD IV
Sbjct: 248 GKDYQEVTHNSILGDCRNRWFDKSITVIGCKMGTFATN--CDHSPFDGIV 295


>SB_5902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 23.8 bits (49), Expect(2) = 5.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 369 CSCCCCR 389
           C CCCCR
Sbjct: 408 CCCCCCR 414



 Score = 23.0 bits (47), Expect(2) = 5.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 366 SCSCCCC 386
           SC CCCC
Sbjct: 404 SCICCCC 410


>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1428

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -2

Query: 352  RLIHSHLVFLDVDDPKSLPICCHSESQLSPYKIFYV*HMDDIYCIG 215
            R+ + H++   +  P++L + C SE  +SP +  +   +DD+ C G
Sbjct: 881  RIRNGHVICRHLGYPRALSVSCCSEFGISPSRRIW---LDDVICRG 923


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 217 LCSIYRPYATRKRFYKGTAVIQNDNKWEVTLDHR 318
           + +IYR Y  +   Y  ++++ N   W+V L +R
Sbjct: 280 ISNIYRYYQGKPNLYINSSIVHNGRAWDVELLYR 313


>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 464 LSRAVLHNAVKCMVACEIVSFCESHSTATTRARGSFPTVNTFPF 333
           LSR   +++++    C    FC + + A T   G +  VNT PF
Sbjct: 16  LSRGARNSSIRHATRC----FCNARANAVTTNDGDYVVVNTPPF 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,244,304
Number of Sequences: 59808
Number of extensions: 398468
Number of successful extensions: 847
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)