Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g17
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-30|CAB55134.2|  269|Caenorhabditis elegans Hypothetical...    82   3e-16
Z83233-3|CAB05762.1|   83|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AL117204-30|CAB55134.2|  269|Caenorhabditis elegans Hypothetical
           protein Y116A8C.27 protein.
          Length = 269

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
 Frame = +1

Query: 250 KRFYKGTAVIQNDNK------WEVTLDHRRLKTPNGNVLTVGNEPLARVVAVEWDSQNET 411
           K+FYK  +VI   ++       +V LDHR LKT  G VL + + PLA  +A EW SQ+E 
Sbjct: 24  KKFYKEVSVINETDESTGNQIHKVLLDHRVLKTQGGQVLKLDSYPLALAIAEEWSSQDEF 83

Query: 412 ISQATMHLTALCNTALDNPGKLTSHDIVNYLLEHYPTDTLLFYSXXXXXXXXXXXXKWTP 591
           +    M LT L  TA DNP + T+  I   +L++   DT+LF++            KW P
Sbjct: 84  LQLGQMRLTGLAFTAQDNPLEQTADTISQKILDYVEGDTVLFFNTESSKLHRYQEEKWAP 143

Query: 592 ILDWFQKTFNVK 627
           ++        +K
Sbjct: 144 LIKNLNNDLGIK 155


>Z83233-3|CAB05762.1|   83|Caenorhabditis elegans Hypothetical
           protein K06B4.3 protein.
          Length = 83

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 369 CSCCCCRMGFTK*NNF-TSHHAFDRI 443
           C CCCC   F   NNF  S++++D I
Sbjct: 53  CCCCCCGCLFRSNNNFNNSNNSYDNI 78


>U64836-7|AAG24061.1|  674|Caenorhabditis elegans Hypothetical
           protein F10G2.7 protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +1

Query: 292 KWEVTLDHRRLKTPNGNVLTVGNEPLARV-VAVEWDSQNETISQATMHLTALCNTALDNP 468
           K+  ++ + +LKT + N++  GN+PL R    +    +++     +M + A+  + L N 
Sbjct: 411 KFFESMANEQLKTEDDNLICWGNQPLRRFWHTLIGTEEHDDKGHGSMEMLAV--SLLKNA 468

Query: 469 GKLTSHDIVNY 501
            ++   DI+N+
Sbjct: 469 REVPKKDIINF 479


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,744,132
Number of Sequences: 27780
Number of extensions: 313130
Number of successful extensions: 803
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)