Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g17
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40660.1 68418.m04936 ATP12 protein-related weak similarity t...    60   9e-10
At3g61710.2 68416.m06916 autophagy protein Apg6 family contains ...    31   0.64 
At3g61710.1 68416.m06915 autophagy protein Apg6 family contains ...    31   0.64 
At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p...    30   1.1  
At1g51290.1 68414.m05768 F-box family protein (FBX10) contains P...    30   1.1  
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei...    28   4.5  
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa...    28   4.5  
At1g51320.1 68414.m05771 F-box family protein (FBX11) contains F...    28   4.5  
At1g06660.1 68414.m00706 expressed protein                             28   6.0  
At5g35180.1 68418.m04169 expressed protein                             27   7.9  
At4g23940.1 68417.m03443 FtsH protease, putative contains simila...    27   7.9  

>At5g40660.1 68418.m04936 ATP12 protein-related weak similarity to
           SP|P22135 ATP12 protein, mitochondrial precursor
           {Saccharomyces cerevisiae}
          Length = 325

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
 Frame = +1

Query: 250 KRFYKGTAVIQND--NKWEVTLDHRRLKTPNGNVLTVGNEPLARVVAVEWDSQ-NETISQ 420
           KRFYK     + D  N W V LD+R LKTP+   L + +  LA+ +A EW+ Q  E I  
Sbjct: 87  KRFYKKVTTREADDGNGWTVMLDYRTLKTPSKRPLKLRSLALAKAIAAEWEYQLTEGIRP 146

Query: 421 ATMHLTALCNTALDNPGKLTSHDIVNYLLEHYPTDTLLFY----SXXXXXXXXXXXXKWT 588
            TM L  L  TAL+    LT   I+ +L      D + F     +               
Sbjct: 147 FTMPLMRLACTALERV-PLTRSKIIEHLSRKIHQDLVFFRAPEDNDLTSDVHDIQVESID 205

Query: 589 PILDWFQKTFNVK 627
           P+L+W +  F VK
Sbjct: 206 PLLEWIESEFRVK 218


>At3g61710.2 68416.m06916 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 386

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 289 NKWEVTLDHRRLKTPNGNVLTVGNEPLARVVA--VEWDSQNETISQATMHLTALCN 450
           NK  V +D   ++  +G   T+ N  L R+ A  VEWD  N    QA + L  +CN
Sbjct: 302 NKTNVLIDAFPIRN-DGEFGTINNFRLGRLPAIKVEWDEINAAWGQACLLLHTMCN 356


>At3g61710.1 68416.m06915 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 517

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 289 NKWEVTLDHRRLKTPNGNVLTVGNEPLARVVA--VEWDSQNETISQATMHLTALCN 450
           NK  V +D   ++  +G   T+ N  L R+ A  VEWD  N    QA + L  +CN
Sbjct: 302 NKTNVLIDAFPIRN-DGEFGTINNFRLGRLPAIKVEWDEINAAWGQACLLLHTMCN 356


>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 193

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 26/93 (27%), Positives = 37/93 (39%)
 Frame = +1

Query: 22  HKLFFGFIQHTFTL*IENNCIFNLMNTCTYERYVKXXXXXXXXXXXXXXFTLASGISTLL 201
           H LFF FI  T T+ I +  +F L N C +  +                F LASG S  L
Sbjct: 8   HLLFFSFIIATCTISIVSGTVFTLSNRCNFTVW-PGILTANRTLLRGGGFALASGSSVNL 66

Query: 202 KTRCTLCSIYRPYATRKRFYKGTAVIQNDNKWE 300
                   ++R    ++     T+ IQN   W+
Sbjct: 67  TVSPENVKMHR---CKRSTTSHTSRIQNRLLWK 96


>At1g51290.1 68414.m05768 F-box family protein (FBX10) contains Pfam
           F-box domain PF:00646; similar to F-box protein family,
           AtFBX9 (GP:20197985) {Arabidopsis thaliana}
          Length = 377

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 328 FLDVDDPKSLPICCHSESQ 272
           FLD DD K L ICC+ E+Q
Sbjct: 305 FLDNDDAKRLVICCYDETQ 323


>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
           similar to SP|Q05022 rRNA biogenesis protein RRP5
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00575: S1 RNA binding domain
          Length = 1838

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -2

Query: 418 VKLFHFVNPILQQQHEQEVHSQRLIHSHLVFLD 320
           V LFH  NP+  +  + E +  + +++ ++F+D
Sbjct: 283 VDLFHLKNPLSNKSWKDEYNQNKTVNARILFID 315


>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 359

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
 Frame = -2

Query: 460 PEQYYTMRSNAWW--LVKLFHFV---------NPILQQQHEQEVHSQRLIHSHLVFLDVD 314
           P QY+T     WW  +++  ++           P L+QQ+ ++V +   +H   V L+VD
Sbjct: 78  PPQYFTTAQPNWWGPMMRPAYYCPPQPQTQPPKPYLEQQNAKKVRNDVNVHRDTVRLEVD 137

Query: 313 D 311
           D
Sbjct: 138 D 138


>At1g51320.1 68414.m05771 F-box family protein (FBX11) contains
           F-box domain PF:00646
          Length = 375

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 328 FLDVDDPKSLPICCHSES 275
           FLD DD K L ICC+ E+
Sbjct: 307 FLDNDDAKRLVICCYDET 324


>At1g06660.1 68414.m00706 expressed protein
          Length = 481

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 325 KTPNGNVLTVGNEPLARVVAVEWDSQNET 411
           +TP   V+T G+ P+  +VA +W    +T
Sbjct: 371 RTPGVGVITPGDRPIIGLVAAQWIENEQT 399


>At5g35180.1 68418.m04169 expressed protein
          Length = 778

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +1

Query: 340 NVLTVGNEPLARVVAVEWDSQNETISQATMHLTALCNTALDNPG-KLTSHDIVNYLLEHY 516
           N   +G +PL  +++V+W   +  +    +H   L  +    PG KL    ++N  +   
Sbjct: 582 NAKVMGGQPLLTLISVDWFKVDSAVDNIALHPKCLIQS---EPGKKLPFILVINLQVPAK 638

Query: 517 PTDTLLFY 540
           P   L+ Y
Sbjct: 639 PNYCLVLY 646


>At4g23940.1 68417.m03443 FtsH protease, putative contains
           similarity to zinc dependent protease GI:7650138 from
           [Arabidopsis thaliana]
          Length = 946

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 403 NETISQATMHLTALCNTA--LDNPGKLTSHDIVNYLLEHYPTDTLL 534
           N+T+S    + TAL  T   L N  ++ S + ++++L+HYP  T L
Sbjct: 863 NKTVSLLRQNQTALLKTVKVLLNQKEI-SGEAIDFILDHYPPQTPL 907


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,435,084
Number of Sequences: 28952
Number of extensions: 272441
Number of successful extensions: 640
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)