Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g16
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34320.1 68414.m04259 expressed protein contains Pfam domain ...    32   0.32 
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote...    29   1.7  
At2g04900.1 68415.m00509 expressed protein                             29   2.2  
At3g11310.1 68416.m01375 hypothetical protein                          28   5.1  
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea...    28   5.1  
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea...    28   5.1  

>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 657

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 407 FFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTER--VVPIVETGA 565
           F H     +N++A+D+ +     G     +P++ENVD  K+T      PIV +G+
Sbjct: 19  FAHVNGHHLNNNASDLNSHSGESGLKDDPSPVTENVDDNKHTSESFSFPIVSSGS 73


>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 654

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -2

Query: 237 KVGISFHKGANRLN---GERFSHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKAMKTA 67
           K+ +S  KG   L+   G +FSHGN+  S+V+    +   +S  G    +A P   M+ A
Sbjct: 461 KITLSAAKGIAHLHAAGGPKFSHGNIKSSNVIMKQESDACISDFGLTPLMAVPIAPMRGA 520

Query: 66  KRRGENI 46
             R   +
Sbjct: 521 GYRAPEV 527


>At2g04900.1 68415.m00509 expressed protein
          Length = 128

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -2

Query: 540 TRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTG 427
           T S++ ++ T +L+ A +T+YP+     +T+  + F+G
Sbjct: 58  TASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSG 95


>At3g11310.1 68416.m01375 hypothetical protein
          Length = 539

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = +2

Query: 353 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELT-------SDGYLVVTAPISEN 511
           V GS+   +DDH +     F +   P +SS  D+   +T        D Y+V+   +   
Sbjct: 339 VPGSEGGADDDHHIVMDHHFESPHDPASSSEIDLNEPVTGSEGGADDDHYIVLNHLVESP 398

Query: 512 VDKTKNTE 535
            D+  ++E
Sbjct: 399 HDRAPSSE 406


>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 793

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 492 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 406
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 790

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 492 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 406
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,405,201
Number of Sequences: 28952
Number of extensions: 177586
Number of successful extensions: 556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)