Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g15
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    28   1.4  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.9  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   2.5  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    27   3.3  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    26   4.4  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    26   5.8  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    26   5.8  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   7.7  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +1

Query: 457 ISQILFDIWPFRIKSVQFSKIYKYMRNHLVSLVFFS*ILSKERSLVLVYLCFDYYSQKLI 636
           +SQI + +W F   S   S I KY+ +H       S + SK+  L++  L    +   + 
Sbjct: 256 LSQINYFLWFFFFFSFP-SYIIKYLMSHSRRSKLLSAVFSKKSFLIVSVLLLIAHFNTIF 314

Query: 637 HNFI 648
           H FI
Sbjct: 315 HPFI 318


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 425 H*ATFLQHNILFRKYFSTYGL-FALKVYNFQKYINICGIIWY 547
           H  +FL H+     Y++ +GL + L + + + YIN  G +WY
Sbjct: 222 HNDSFLHHS----NYYAGFGLSYYLYLSSMKAYINSSGCLWY 259


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1010

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 200  FDKGNNFDLCSAFTFADLAGGLPIFHI---NPNDQRTAQWLSKDLTLLHIYEREHIFG 364
            F+  N+F+  +  T +  +G +  F +   +PND    QWL K  T + I E+  +FG
Sbjct: 837  FEVNNSFNASNVNTNSSFSGPISEFLVELFSPNDDAKQQWLPKK-TYISILEQ--LFG 891


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = +2

Query: 191 TTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREHIFGKR 370
           T +F  G    L   +    L G +PI   +P      + L+ D  ++H+Y +  +  K 
Sbjct: 208 TNIFSSGGGLTLSEKYKLPFL-GSVPI---DPKFGEMIENLTPDSNIVHLYSKTEMSKKF 263

Query: 371 NWLARSFISR 400
           +++   F+++
Sbjct: 264 SFITNEFLNQ 273


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = -1

Query: 497 LMRKGHMSKSICEIEYYVGEMSLSGDNRS 411
           L++  ++ KS  E+ + +GE+S +GD+++
Sbjct: 339 LIKDEYLQKSKLELSFILGELSKNGDDKN 367


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = +2

Query: 386 SFISRTLCDFGCHH*ATFLQHNILFRKYFSTYGLFALKVYNFQKYINICGIIWY 547
           S IS    +FG H    +   N+   K ++  GL  L       Y N   ++ Y
Sbjct: 47  SLISSAAYEFGLHKHGPYYNDNVDDLKRYTFMGLLTLPTSEHDVYFNATRVLVY 100


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 105 LDSKFSHGQSTVKTVFKVLTLSL--QTRRICKHLLKV 1
           L+S+F HG + V ++  VL LSL  Q      HLL +
Sbjct: 239 LNSRFFHGLTLVPSLILVLLLSLGYQVGSFLSHLLSL 275


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 643  NYVLIFVNSSRNISKLKLNYALLTVFMRKILVIP 542
            N V  F N  R  S LK+  ALLT  +    ++P
Sbjct: 1150 NLVPAFFNKFREASTLKIQKALLTRLLNSGRIVP 1183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,259
Number of Sequences: 5004
Number of extensions: 60499
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)