Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g15
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338     30   1.5  
10_01_0105 + 1287423-1289924                                           30   2.0  
05_01_0213 - 1606383-1606816,1607695-1608355                           30   2.0  
03_05_0447 - 24421442-24422767                                         29   3.4  
10_08_0418 - 17779499-17780952,17781177-17782017                       29   4.5  
12_02_0758 - 22858221-22858367,22859362-22859460,22859505-228595...    28   7.9  
10_01_0032 + 406462-406714,407433-407664,408026-408219,408340-40...    28   7.9  

>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
          Length = 740

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 369 GTGWRGPSSAEHSATSVVTTERHFSNIIFYFANTFRHMA 485
           G  W+G S+   +   V+   R +  +IF+++N+F  MA
Sbjct: 610 GGVWQGNSNGHAAGDPVMHDNRRYRYLIFFYSNSFSFMA 648


>10_01_0105 + 1287423-1289924
          Length = 833

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 319 FRQPLRCALVIRVNVEDGQTPGQVCERESRTQVEI 215
           FR P    L+I  N   GQ PG +CE E+   +++
Sbjct: 447 FRAPNLENLIISSNYITGQVPGSICESENMKHLDL 481


>05_01_0213 - 1606383-1606816,1607695-1608355
          Length = 364

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 430 SVVTTEVAECSADE-GPRQPVPLSEDVLSLVNVQQGQIFRQP 308
           +  TT  + CS++E GP  P P SE++    N Q  +   QP
Sbjct: 197 TTTTTTTSSCSSEEVGPSSPSPTSEEIRLANNQQSSRRKLQP 238


>03_05_0447 - 24421442-24422767
          Length = 441

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -3

Query: 387 DLASQFLFPKMCSLS*MCSRVRSLDNHCAVRWSLGLMWKMGRPPARSANVKAEHKSKLLP 208
           D A + +    C+     + VRS+D   A+  + G +  MG  PA +A     H  +  P
Sbjct: 211 DFALRDVCAATCAAGSTAAAVRSVDGRTAIAAASGGVAAMGN-PAAAAITHVLHNKQEFP 269

Query: 207 LSNTVVSLI 181
           L+ TV  ++
Sbjct: 270 LATTVDDIL 278


>10_08_0418 - 17779499-17780952,17781177-17782017
          Length = 764

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 330 CCTFTRESTSSERGTGWRGPSSAEHSATSVVTTERHFSNIIFYF 461
           C  F  ++ +  R T  + P+ A+H+   +VT    F N +FYF
Sbjct: 203 CEVFVLDAPAYWRPTAQQPPAPADHNVKVMVTDPPVFLNGLFYF 246


>12_02_0758 -
           22858221-22858367,22859362-22859460,22859505-22859557,
           22859674-22859728,22860204-22860284,22860779-22861213
          Length = 289

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 186 G*RQCLIRATISTCVRLSRSQTW-PGVCPSSTLTLMTNAQRSGCLKI*PC 332
           G R  L  ATIS+   LSR +TW P +   +T + + N+ R  CL+   C
Sbjct: 93  GGRTSLPCATISSPQALSRKETWTPYLLAVATNSSIGNSTRHICLRRFAC 142


>10_01_0032 +
           406462-406714,407433-407664,408026-408219,408340-408473,
           408847-409437
          Length = 467

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 122 AEPRSDWIQSSATDSPRLKLFLKFSHCHC 36
           AE R DW Q    D P L + +   +C+C
Sbjct: 427 AEKRKDWYQDKGFDIPCLAVDIGKENCYC 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,618,430
Number of Sequences: 37544
Number of extensions: 370872
Number of successful extensions: 841
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)