Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g15
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)               33   0.21 
SB_44234| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_29977| Best HMM Match : IL8 (HMM E-Value=1)                         29   2.6  
SB_10085| Best HMM Match : Sod_Fe_N (HMM E-Value=1.4)                  29   3.5  
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)
          Length = 464

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/70 (34%), Positives = 32/70 (45%)
 Frame = +2

Query: 29  LVCSDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYPLIRLTTVFDK 208
           L C  NV TL+++ T    W N       A   SFKE +VL  Y  G YP   +    ++
Sbjct: 154 LNCGVNVTTLRSLYTKS--WSNVPEQFIKAYSASFKETIVLCRY--GLYP-CNMKLFTEQ 208

Query: 209 GNNFDLCSAF 238
            NN   C +F
Sbjct: 209 VNNIGRCFSF 218


>SB_44234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 170 SYPLIRLTTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRT 301
           S+    +  +F    NF   +   F DL+  LPIFHI  ND+ T
Sbjct: 162 SHTATLIDNMFCNRPNFSQIADILFNDLSDHLPIFHICTNDENT 205


>SB_29977| Best HMM Match : IL8 (HMM E-Value=1)
          Length = 521

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 291 SLGLMWKMGRPPARSANVKAEHKSKLL 211
           S+G +W+ G  PA  ++V  +H S++L
Sbjct: 152 SMGFLWRSGLKPAAQSSVSVQHISQIL 178


>SB_10085| Best HMM Match : Sod_Fe_N (HMM E-Value=1.4)
          Length = 371

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -1

Query: 506 CTLLMRKGHMSKSICEIEYYVGEMSLS 426
           C L +  G ++ SIC++++Y G+++ S
Sbjct: 114 CDLDLNMGDLNHSICDLDHYTGDLNYS 140



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -1

Query: 506 CTLLMRKGHMSKSICEIEYYVGEMSLS 426
           C L +  G ++ SIC++++Y G+++ S
Sbjct: 9   CDLDLNMGDLNHSICDLDHYTGDLNHS 35



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -1

Query: 506 CTLLMRKGHMSKSICEIEYYVGEMSLS 426
           C L +  G ++ SIC++++Y G+++ S
Sbjct: 72  CDLDLNMGDLNHSICDLDHYTGDLNHS 98


>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 336 TFTRESTSSERGTGWRGPSSAEHSATSVVTTE 431
           T  + ST++ RG+   G +S   +ATS + TE
Sbjct: 108 TIAQTSTAAPRGSSTEGRTSTRETATSSINTE 139


>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1922

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
 Frame = -3

Query: 420  QPKSQSVLLMKDLASQFLFPKMCSLS*MCSR--VRSLDNHCAVRWSLGLMWKM-GRPPAR 250
            +P+   VLL + +AS+ + P  C+   M  R   RS   HC  +WS G + ++   P  +
Sbjct: 1506 RPEDSRVLL-ETMASRCV-PGTCANKEMALRNPERSSRGHCCRKWSTGRVTEVYPGPDGK 1563

Query: 249  SANVKAEHKSKLLPLSNTVVSLIKG*DPLM*KLKTTSSLN 130
              NVK +  +     + T +++I+  D  + ++ +    N
Sbjct: 1564 VRNVKVQTATGKYSRTVTKIAVIQAADEELLQINSNRDRN 1603


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,955,855
Number of Sequences: 59808
Number of extensions: 452536
Number of successful extensions: 1368
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)