Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g15
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27930.1 68416.m03486 expressed protein                             30   1.6  
At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I...    27   8.7  
At1g16750.1 68414.m02011 expressed protein contains Pfam profile...    27   8.7  

>At3g27930.1 68416.m03486 expressed protein
          Length = 425

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 285 GLMWKMGRPPARSANVKAEHKSKL 214
           G++WKMG+ P   A+V AE+ S+L
Sbjct: 391 GIVWKMGKRPMYQADVDAENFSEL 414


>At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV
           GI:9651815 from [Arabidopsis thaliana]; identical to
           cDNA DNA ligase IV, GI:9651814
          Length = 1219

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 107 DWIQSSATDSPRLKLFLKFSHCHCK-QDVFANI 12
           +WIQ S T S +   F KF   +CK  D F  +
Sbjct: 15  NWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAV 47


>At1g16750.1 68414.m02011 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 529

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 119 EPRSDWIQSSATDSPRLKLFL-KFSHCHCKQDV 24
           E + D+IQ+S   SPR KL + +  HC  K+ V
Sbjct: 441 EAQKDYIQASVGVSPRGKLIVPQMLHCFAKKSV 473


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,549,571
Number of Sequences: 28952
Number of extensions: 307557
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)