Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g14
         (120 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    37   4e-04
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   2.4  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    23   7.4  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    22   9.8  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 36.7 bits (81), Expect = 4e-04
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 21  IEFDSYIIPSNEIKNNEFRLLDVDXRIILP 110
           + FDSY++P  +++    R L+VD R++LP
Sbjct: 137 VSFDSYMVPEEDLEEGSLRQLEVDNRLVLP 166


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 66  YFLFHWMGLYM-SQIQYY*NXN 4
           YF+ HW G Y+ S +Q Y + N
Sbjct: 150 YFVPHWNGTYLASNVQIYNSSN 171


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 66  YFLFHWMGLYM-SQIQYY*NXN 4
           YF+ HW G Y+ S +Q + + N
Sbjct: 150 YFVPHWNGTYLASNVQIFNSSN 171


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 84  LIVGIHYFLFHWMGLY 37
           L++GIH F +H   LY
Sbjct: 402 LVIGIHVFGYHVYWLY 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 323,743
Number of Sequences: 5004
Number of extensions: 2753
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 20
effective length of database: 2,262,398
effective search space used: 42985562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)