Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g14
         (120 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045640-8|AAC02571.1|  394|Caenorhabditis elegans Hypothetical ...    25   9.9  
AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical ...    25   9.9  

>AF045640-8|AAC02571.1|  394|Caenorhabditis elegans Hypothetical
           protein C11D2.2 protein.
          Length = 394

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 30  DSYIIPSNEIKN 65
           DSY+IP +EIKN
Sbjct: 309 DSYVIPCSEIKN 320


>AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical
           protein Y4C6A.3 protein.
          Length = 330

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 90  LHLIVGIHYFLFHW 49
           LH++  ++YFLF W
Sbjct: 128 LHIVFALYYFLFIW 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,818
Number of Sequences: 27780
Number of extensions: 12961
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 12,740,198
effective HSP length: 20
effective length of database: 12,184,598
effective search space used: 231507362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)