Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g14
         (120 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    18   9.7  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    18   9.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    18   9.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 54  EIKNNEFRLLDVD 92
           E   +E+RLL+VD
Sbjct: 101 ENMTSEYRLLEVD 113


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 63  FLFHWMGLYMSQIQYY 16
           FL +W G   + I+Y+
Sbjct: 69  FLSYWRGNLANVIRYF 84


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 63  FLFHWMGLYMSQIQYY 16
           FL +W G   + I+Y+
Sbjct: 69  FLSYWRGNLANVIRYF 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,827
Number of Sequences: 438
Number of extensions: 159
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 20
effective length of database: 137,583
effective search space used:  2614077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)