BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11g13 (654 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 29 0.77 SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.1 SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 27 3.1 >SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual Length = 563 Score = 28.7 bits (61), Expect = 0.77 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +3 Query: 519 YTTTVSCFNDINGNFSAFISLLLVDISAGAPCNSVDPQNETIQ 647 ++ TVS F D ++ + +SL+LVDI A DP NE IQ Sbjct: 357 HSLTVSKFIDKLESYESQLSLILVDIEA----KFYDPSNEDIQ 395 >SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 601 Score = 26.6 bits (56), Expect = 3.1 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = -2 Query: 137 KILDIFFYN*NSLSFNTRMQY 75 K LD+ +YN N+LS+N ++Y Sbjct: 429 KALDVTYYNLNTLSWNLYIEY 449 >SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosaccharomyces pombe|chr 1|||Manual Length = 501 Score = 26.6 bits (56), Expect = 3.1 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +2 Query: 128 LKFLKHNMCYI*YYSYKMSLFNEKFNVPSNFNIKYSDSKDTSHYY 262 LK + N C + +S LF+E FN+ +++S S+ +Y Sbjct: 106 LKDSEENTCEMILHSSFYLLFHEPFNILKGSTLRFSQSRIHQKWY 150 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,628,728 Number of Sequences: 5004 Number of extensions: 52675 Number of successful extensions: 127 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 127 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 295793106 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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