Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g13
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.84 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 543 NDINGNFSAFISLLLVDIS 599
           +DING F++  SLLL+++S
Sbjct: 539 SDINGVFTSIASLLLLNLS 557


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/59 (23%), Positives = 22/59 (37%)
 Frame = +1

Query: 412 MYYYIDEEEQKMKGTLRDWRKALRTPITYRVGNAVRIQPQLVVLMTSMGTFLLLLVYYW 588
           M  YI   + ++   LR        P TYR G +  +     +     GT+ + L   W
Sbjct: 197 MVMYISVFKAEVGSKLRPRSSFQGPPFTYRYGFSFLLYVSGFITTEVAGTYAIFLYISW 255


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 516 SYTTTVSCFNDINGNFSAFISLLLVDISAGAPCNSV 623
           S+T T++     +   +A I++L+V  + G P N +
Sbjct: 428 SFTATLASIGAASIPSAALITMLIVLTALGLPTNDI 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,893
Number of Sequences: 438
Number of extensions: 3723
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)