Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g12
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    37   0.002
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    33   0.026
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    30   0.24 
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    30   0.31 
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    29   0.73 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    28   1.3  
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    27   1.7  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    27   1.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.0  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   9.0  

>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
 Frame = +3

Query: 201 GRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAAS---QLTSKVIVAVGIDLPE 371
           G+ A    ++   IK I+  +GF G Y+GLSA +LG+  ++    L  K   AV I    
Sbjct: 197 GQAAQYRSSIDCIIKTIRL-EGFRGLYKGLSASLLGVGESTLQWVLYEKFKHAVAIRQLR 255

Query: 372 INDPPNIVTDDEPKVEDY-IKLGRRDMIMQTVAVVIAHPFHVVSVRMMAS-FIGKEEHYS 545
             +   I      KV D+  KLG    I + +A  IA+P  VV  R+  S  I     Y+
Sbjct: 256 RKE-LGIQETIYDKVLDWGGKLGGAG-IAKFMAAGIAYPHEVVRTRLRQSPSINGTPKYT 313

Query: 546 SLLGAIVSIYKDDGILGFLHGL 611
            L+     ++ + GI+G   GL
Sbjct: 314 GLIQCFKLVWMEQGIVGLYGGL 335


>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 33.5 bits (73), Expect = 0.026
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 483 PFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPK 620
           P  V  V M +   G +     ++  I+SIYK++GI G   G +P+
Sbjct: 224 PLEVARVEMQSLTKGIQHSSPGIMQTIMSIYKNNGIKGLYRGAVPR 269



 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 474 IAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIP 617
           +  P  V  V+M A+         ++  AI +I    GILGF  GLIP
Sbjct: 28  LGQPLEVTKVQMAAN------RTQTMAQAIKAIMSRGGILGFYQGLIP 69


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 474 IAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGL 611
           +++PF V   +M    I K + +  L   + + YK+ G+ GF  GL
Sbjct: 253 VSYPFEVCRRKMQIGGIRKNKSFLRLKQVVQTTYKEAGMRGFFVGL 298


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 34/139 (24%), Positives = 52/139 (37%)
 Frame = +3

Query: 204 RPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDP 383
           RP   L    Q  + I   +G  G YRGL+A +    A S +      ++   L +   P
Sbjct: 138 RPNPRLKGFLQASRIIVHENGIRGLYRGLAATVARQAANSGVRFTAYNSIKQSL-QSRLP 196

Query: 384 PNIVTDDEPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAI 563
           P    D++        +G    +   + V    P   V  RM +    KE  Y + +   
Sbjct: 197 P----DEKLSTVTTFLVG---SVAGIITVYCTQPIDTVKSRMQSLSASKE--YKNSIHCA 247

Query: 564 VSIYKDDGILGFLHGLIPK 620
             I   DG+L F  G  P+
Sbjct: 248 YKILTQDGLLRFWSGATPR 266


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 462 VAVVIAHPFHVVSVRMMASFI-GKEEHYSSLLGAIVSIYKDDGILGFLHG 608
           +   +  P  V+  R   + I G   +Y ++  AI  IYK +GI GF  G
Sbjct: 239 IGQTLTFPADVLRRRFQVNRIPGIGHNYKNIKSAIFHIYKTEGINGFFRG 288



 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 504 RMMASF-IGKEEHYSSLLGAIVSIYKDDGILGFLHG 608
           RM   F +   + Y+SL   +V I+  +G++GF  G
Sbjct: 43  RMKIIFQVQNNKEYTSLTSTLVKIWNREGLIGFFRG 78


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 201 GRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLI 314
           G+  M+L      ++ I  ++G  G YRG+   MLG +
Sbjct: 45  GKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYL 82


>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 426 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 533
           +K+G +D     V    AHPFHVV +  M S  G +
Sbjct: 77  VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 426 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 533
           +K+G +D     V    AHPFHVV +  M S  G +
Sbjct: 77  VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 474  IAHPFHVVSVRMMAS-FIGKEEHYSSLLGAIVSIYK 578
            I  P   VS+ + A  F G  E+Y  L G+I + YK
Sbjct: 2155 ITWPLSAVSILIFALLFKGLPEYYRQLSGSIPAFYK 2190


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 473 NDCYRLHDHVSAS*FDVIFNFGFIIGDDV 387
           NDC R ++H + S F  +    F+  DD+
Sbjct: 635 NDCTRFYEHPTLSVFVKVEGIDFMKDDDI 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,830
Number of Sequences: 5004
Number of extensions: 57960
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)