Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11g10
(339 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam ... 48 2e-06
At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam ... 48 2e-06
At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam ... 47 4e-06
At4g03690.1 68417.m00504 hypothetical protein very low similarit... 30 0.45
At4g31630.1 68417.m04493 transcriptional factor B3 family protei... 29 0.60
At5g60640.2 68418.m07611 thioredoxin family protein similar to p... 28 1.4
At5g60640.1 68418.m07610 thioredoxin family protein similar to p... 28 1.4
At2g32590.1 68415.m03979 barren family protein low similarity to... 28 1.4
At1g66070.1 68414.m07499 translation initiation factor-related s... 28 1.4
At3g13200.1 68416.m01652 Cwf15 / Cwc15 cell cycle control family... 28 1.8
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 28 1.8
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 28 1.8
At2g02880.1 68415.m00238 mucin-related similar to putative mucin... 28 1.8
At1g74870.1 68414.m08677 expressed protein contains similarity t... 28 1.8
At1g77855.1 68414.m09073 hypothetical protein 27 2.4
At5g59230.1 68418.m07423 transcription factor-related low simila... 27 3.2
At5g37475.1 68418.m04510 translation initiation factor-related s... 27 4.2
At5g20930.1 68418.m02486 protein kinase, putative nearly identic... 27 4.2
At4g31510.1 68417.m04475 expressed protein low similarity to MTD... 27 4.2
At4g28410.1 68417.m04067 aminotransferase-related similar to nic... 27 4.2
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 26 5.6
At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu... 26 5.6
At2g38550.1 68415.m04736 expressed protein contains Pfam profile... 26 5.6
At1g49920.1 68414.m05598 zinc finger protein-related weak simila... 26 5.6
At5g39785.2 68418.m04819 expressed protein 26 7.4
At5g39785.1 68418.m04818 expressed protein 26 7.4
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 26 7.4
At2g11910.2 68415.m01278 expressed protein 26 7.4
At2g11910.1 68415.m01277 expressed protein 26 7.4
At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ... 26 7.4
At5g36905.1 68418.m04423 RNase H domain-containing protein low s... 25 9.7
At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) fa... 25 9.7
At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containi... 25 9.7
At1g69070.1 68414.m07903 expressed protein 25 9.7
At1g50660.1 68414.m05696 expressed protein similar to liver stag... 25 9.7
>At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 74
Score = 48.0 bits (109), Expect = 2e-06
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +2
Query: 149 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 280
E+W ++ E WED+W+DD + DDF++QLR++LE D+K
Sbjct: 31 EDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 74
>At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 74
Score = 48.0 bits (109), Expect = 2e-06
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +2
Query: 149 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 280
E+W ++ E WED+W+DD + DDF++QLR++LE D+K
Sbjct: 31 EDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 74
>At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 73
Score = 46.8 bits (106), Expect = 4e-06
Identities = 19/45 (42%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = +2
Query: 149 ENWGTEDADDEDVSV-WEDNWEDDVIQDDFNQQLRQQLEKLKDQK 280
E+W E + ++VS+ WED+W+DD + DDF++QL+++LE ++K
Sbjct: 30 EDW-LEKEEVKEVSLQWEDDWDDDDVSDDFSRQLKKELENASEKK 73
>At4g03690.1 68417.m00504 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 570
Score = 29.9 bits (64), Expect = 0.45
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 191 VWEDNWEDDVIQDDFNQQLRQQLEK 265
VWE W+ ++ +DF ++LR QLE+
Sbjct: 156 VWEHTWK--ILSEDFKRKLRNQLER 178
>At4g31630.1 68417.m04493 transcriptional factor B3 family protein
similar to reproductive meristem gene 1 from [Brassica
oleracea var. botrytis] GI:3170424, [Arabidopsis
thaliana] GI:13604227; contains Pfam profile PF02362: B3
DNA binding domain
Length = 512
Score = 29.5 bits (63), Expect = 0.60
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 161 TEDADDEDVSVWEDNWEDDVIQDDFN 238
T D DD++ +V++D+ +DDV DD N
Sbjct: 114 TSDDDDDERTVFDDDEDDDVGDDDDN 139
>At5g60640.2 68418.m07611 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 536
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 161 TEDADDEDVSVWEDNWEDDV 220
++D DDED+S ED EDDV
Sbjct: 29 SDDVDDEDLSFLEDLKEDDV 48
>At5g60640.1 68418.m07610 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 597
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 161 TEDADDEDVSVWEDNWEDDV 220
++D DDED+S ED EDDV
Sbjct: 29 SDDVDDEDLSFLEDLKEDDV 48
>At2g32590.1 68415.m03979 barren family protein low similarity to
SP|Q9Y7R3 Condensin complex subunit 2 (p105)
{Schizosaccharomyces pombe}; contains Pfam profile
PF05786: Barren protein
Length = 704
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 149 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQ--QLEKLKDQ 277
E+WG ++ D+D ++DN D +D N + Q Q+ K+ Q
Sbjct: 557 ESWGNDNVYDDDDGPFDDNENDQSDAEDTNTLISQPRQVNKIDVQ 601
>At1g66070.1 68414.m07499 translation initiation factor-related
similar to Eukaryotic translation initiation factor 3
subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
(Swiss-Prot:O75822) [Homo sapiens]
Length = 226
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 152 NWGTEDADDEDVSVWEDNWEDD 217
NW ED D+ ++ +D+WEDD
Sbjct: 21 NWDDEDVDENEI---KDSWEDD 39
>At3g13200.1 68416.m01652 Cwf15 / Cwc15 cell cycle control family
protein contains Pfam profile PF04889: Cwf15/Cwc15 cell
cycle control protein; similar to Cell cycle control
protein cwf15 (Swiss-Prot:P78794) [Schizosaccharomyces
pombe]
Length = 230
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +2
Query: 167 DADDEDVSVWEDNWEDDVIQD---DFNQQLRQQLEKLKDQK 280
DADD DV + D+ DD D D + L +L+++K ++
Sbjct: 109 DADDSDVDIKSDDDSDDESDDDDEDDTEALMAELDQIKKER 149
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 149 ENWGTEDADDEDVSVWEDNWEDDVIQDD 232
+ + +D DDED S ED+++DD DD
Sbjct: 83 DEFSEDDYDDEDFS--EDDYDDDEFDDD 108
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 149 ENWGTEDADDEDVSVWEDNWEDDVIQDD 232
+ + +D DDED S ED+++DD DD
Sbjct: 182 DEFSEDDYDDEDFS--EDDYDDDEFDDD 207
>At2g02880.1 68415.m00238 mucin-related similar to putative mucin
GI:18071389 [Oryza sativa]
Length = 314
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 161 TEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 265
T+ +DED W D WE + DD ++R E+
Sbjct: 37 TKSGNDEDK--WNDAWESAWLPDDLTDKIRAPWER 69
>At1g74870.1 68414.m08677 expressed protein contains similarity to
hypothetical proteins
Length = 289
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 194 WEDNWED-DVIQDDFNQQLRQQLEKLKDQKS 283
W W+ +V +++ ++LR LEKL DQK+
Sbjct: 43 WISQWKKANVDEEEIGRRLRSLLEKLTDQKA 73
>At1g77855.1 68414.m09073 hypothetical protein
Length = 317
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 185 HLHHQRLLYPNFPREILR 132
H HH+RLL P R+++R
Sbjct: 109 HYHHRRLLSPQISRQVIR 126
>At5g59230.1 68418.m07423 transcription factor-related low
similarity to transcription factor IIA large subunit
[Arabidopsis thaliana] GI:2826884
Length = 186
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 167 DADDEDVSVWEDNWEDDVIQDDFNQQ--LRQQLEKLKDQKS 283
D ++E ++ +D+ EDD+ DD N Q + Q +K+K K+
Sbjct: 117 DENEEPLNEDDDDEEDDIDDDDMNIQHLVMCQFDKVKRSKN 157
>At5g37475.1 68418.m04510 translation initiation factor-related
similar to Eukaryotic translation initiation factor 3
subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
(Swiss-Prot:O75822) [Homo sapiens]
Length = 225
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 152 NWGTEDADDEDVSVWEDNWEDD 217
NW ED D+ D+ +D+WE++
Sbjct: 21 NWDDEDVDENDI---KDSWEEE 39
>At5g20930.1 68418.m02486 protein kinase, putative nearly identical
to protein kinase tousled gi|433052|gb|AAA32874
Length = 688
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 200 DNWEDDVIQDDFNQQLRQQLE 262
+ WED + D N QLRQ LE
Sbjct: 295 ETWEDGQMLKDLNAQLRQLLE 315
>At4g31510.1 68417.m04475 expressed protein low similarity to MTD1
[Medicago truncatula] GI:9294810
Length = 214
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/39 (25%), Positives = 25/39 (64%)
Frame = +2
Query: 164 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 280
+++D+ED + +D+ +DD DD +L+++ K+ + +
Sbjct: 154 QESDNEDHKLNDDDDDDDSSSDDETSKLKEKRMKMTNHR 192
>At4g28410.1 68417.m04067 aminotransferase-related similar to
nicotianamine aminotransferase [Hordeum vulgare subsp.
vulgare] GI:6469090
Length = 447
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 109 TKVYFLFVSHYTVMIIEIRKYHLM 38
T +Y L+ SH ++EIRKY+L+
Sbjct: 164 TLIYPLYNSHAIHSLVEIRKYNLL 187
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related
protein HARP [Homo sapiens] GI:6693791; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF01844: HNH
endonuclease
Length = 1190
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = -2
Query: 218 RRLPSCLPKPIHL---HHQRLLY-PNFPREIL 135
R LPSCLP +HL H Y P +P+ ++
Sbjct: 267 RWLPSCLPSDVHLVFGHQDNPAYLPRWPKVVV 298
>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
putative similar to cytosine-5 methyltransferase (METII)
[Arabidopsis thaliana] GI:6523846; contains Pfam
profiles PF01426: BAH domain, PF00145: C-5
cytosine-specific DNA methylase
Length = 1404
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 143 PAENWGTEDADDE--DVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 271
P E G E+ +E DV ++N E+D IQ Q L+K++
Sbjct: 537 PLEEIGAEEEFEEVEDVEEEDENEEEDTIQKAIEVQKADTLKKIR 581
>At2g38550.1 68415.m04736 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 335
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 164 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 283
ED+ + V V ++ + DV D + +Q LE K+Q S
Sbjct: 79 EDSGESGVEVGKEKSDIDVEDDTSKEAWKQTLESFKEQVS 118
>At1g49920.1 68414.m05598 zinc finger protein-related weak
similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
mays] GI:1857256; contains Pfam profiles PF03108: MuDR
family transposase, PF04434: SWIM zinc finger
Length = 785
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 158 GTEDADDEDVSVWEDNWEDDVIQDD 232
G +D ++ED V +D +DD + DD
Sbjct: 756 GDDDEEEEDDDVDDDEEDDDDVDDD 780
>At5g39785.2 68418.m04819 expressed protein
Length = 607
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 161 TEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 271
+E+ ++ED + +E WE D +QL+ +++K+K
Sbjct: 192 SEEEEEEDTNGFESLWE----HQDLIEQLKMEMKKVK 224
>At5g39785.1 68418.m04818 expressed protein
Length = 606
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 161 TEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 271
+E+ ++ED + +E WE D +QL+ +++K+K
Sbjct: 192 SEEEEEEDTNGFESLWE----HQDLIEQLKMEMKKVK 224
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 164 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKL 268
ED +DE+V +D+ +DD DD + ++ + + +L
Sbjct: 87 EDCEDENVESEDDDDDDDDDDDDRHSRMLKNVTEL 121
>At2g11910.2 68415.m01278 expressed protein
Length = 168
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 149 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQ 244
EN D+DD+D ED EDD +DD N +
Sbjct: 68 ENKDASDSDDDDDD--EDADEDDDDEDDANDE 97
>At2g11910.1 68415.m01277 expressed protein
Length = 168
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 149 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQ 244
EN D+DD+D ED EDD +DD N +
Sbjct: 68 ENKDASDSDDDDDD--EDADEDDDDEDDANDE 97
>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
putative similar to pathogen-inducible alpha-dioxygenase
[Nicotiana attenuata] GI:12539609; contains Pfam profile
PF03098: Animal haem peroxidase
Length = 631
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 143 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 271
P W D+E + V + +EDD+ + D N L + +K+K
Sbjct: 498 PISKWEELTDDEEAIKVLREVYEDDIEKLDLNVGLHAE-KKIK 539
>At5g36905.1 68418.m04423 RNase H domain-containing protein low
similarity to reverse transcriptase [Arabidopsis
thaliana] GI:976278; contains Pfam profile PF00075:
RNase H
Length = 633
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 143 PAENWGTEDADDEDVSVWEDNW-EDDVIQD 229
P NW D +D+ W+D W +D I+D
Sbjct: 171 PGMNWVV--GDGKDICFWDDKWLVEDPIRD 198
>At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 1092
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 205 VVFPNRYIFIISVFCTPIFRGKFFELVIL 119
+VF + + I VF P+ G FEL+++
Sbjct: 869 IVFKSSVLLAIWVFIIPVLIGLLFELLVI 897
>At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1229
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 146 AENWGTEDADDEDVSVWEDNWEDDVIQDD 232
+E+ G ++ ++E V++ ED EDD DD
Sbjct: 951 SEDTGEDEDEEEWVAILEDEDEDDDDDDD 979
>At1g69070.1 68414.m07903 expressed protein
Length = 901
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 149 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 265
E+W E +DDE + ED EDD +DD + ++ K
Sbjct: 391 EDW--EQSDDELGAELEDEEEDDDEEDDDEEDAELRVHK 427
>At1g50660.1 68414.m05696 expressed protein similar to liver stage
antigen-1 (GI:510184) [Plasmodium falciparum]; similar
to Myosin II heavy chain, non muscle (Swiss-Prot:P08799)
[Dictyostelium discoideum]; similar to liver stage
antigen (GI:9916) [Plasmodium falciparum]; similar to
Kinesin-like protein KLPA (Swiss-Prot:P28739)
[Emericella nidulans]
Length = 725
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 143 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 280
P W ED + E V ED D +DD +Q R + + KD++
Sbjct: 67 PLLKWKVEDRNKERSGVVED----DDYEDDNHQVARSETTRRKDRR 108
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,528,500
Number of Sequences: 28952
Number of extensions: 95710
Number of successful extensions: 450
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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