Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g07
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.3  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    27   2.9  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   3.8  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    26   3.8  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   6.7  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 401  KQHKLLSKNVSQEEWLTLKHNSTILPIVIFLMCWSVI 291
            K HKL  K +  + + T++H   +L  +IF+ CWS I
Sbjct: 939  KFHKLDGKII--DSFKTVEHYMEVLQPMIFMECWSQI 973


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 353 SAILLEKHSSRVACAASIVASCDMLLNPSIPTPELMSVQKLAGS*LLK 496
           S  + + H+SRVA   S+  +    L+  IPT +L+   K+  S LL+
Sbjct: 303 SEFIKDNHTSRVAILISMKLAFQYQLSQVIPTLKLLLQSKVYDSVLLE 350


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 365 LEKHSSRVACAASIVAS-CDMLLNPSIPTPELMSVQKLAGS 484
           L++   R+     ++A  C+   NP + +P+L+ ++KLA S
Sbjct: 355 LDEFEKRLESGEKVMALFCEFPSNPLLNSPDLVRIRKLADS 395


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 320 QWAVLLSCASRSAILLEKHSSRVACAASIVAS 415
           QW+ LL   SRS+  LE HS  ++ + S  +S
Sbjct: 140 QWSQLLRTPSRSSNTLELHSLPISSSPSFPSS 171


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = -3

Query: 438 EGLSNMSQLATIEAAQATLEECF--SRRMADLEAQLNNTAH---CYFLNVLVSYCNAII 277
           +GL+N   L   E   + LE C+  ++ +  L ++L +      C++L   + YC+AI+
Sbjct: 648 KGLNNKPSL---EDVFSNLETCYESAKAIVQLSSKLLSAGQMDKCFYLEFEILYCSAIV 703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,875
Number of Sequences: 5004
Number of extensions: 35978
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)