Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g07
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U50308-4|AAG24030.2|  483|Caenorhabditis elegans Amino acid tran...    29   2.0  
AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 286 CHYFVTIEI*IAFILICNYYFYCFF 212
           CH+F    I I+F++  NY++YC F
Sbjct: 186 CHFF---SIAISFVITLNYFYYCTF 207


>U50308-4|AAG24030.2|  483|Caenorhabditis elegans Amino acid
           transporter protein 2 protein.
          Length = 483

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 338 STILPIVIFLMCWSVIVMPLFRND 267
           S + PI+ FLMC  ++++P F +D
Sbjct: 405 SLLWPILFFLMCLFLLILPFFHSD 428


>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
           protein Y18H1A.3 protein.
          Length = 1258

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 368 EKHSSRVACAASIVASCDMLLNPSIPTPE 454
           E+HSS ++ A +I+ SC  L++  I  P+
Sbjct: 358 ERHSSAISIAFAILTSCKQLVSHRIQLPK 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,231,409
Number of Sequences: 27780
Number of extensions: 205041
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)