Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g07
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   5.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   5.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.4  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -3

Query: 438 EGLSNMSQLATIEAAQATLEECFSRRMADLEAQLNNTAHCY 316
           EG  N     ++ +     +EC+  R + L+ +     HCY
Sbjct: 70  EGFCNSQVQPSVASTTGFSKECYCCRESYLKERHITLHHCY 110


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -3

Query: 438 EGLSNMSQLATIEAAQATLEECFSRRMADLEAQLNNTAHCY 316
           EG  N     ++ +     +EC+  R + L+ +     HCY
Sbjct: 70  EGFCNSQVQPSVASTTGFSKECYCCRESYLKERHITLHHCY 110


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 134 VITLIITLHMIENQKQPVWWVRQKLKEEA 220
           V T ++T+H I   K    +  ++LKEEA
Sbjct: 391 VQTHVLTIHTIPEVKVTPRFQAKRLKEEA 419


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 205 FLPYPPYRLF 176
           F PYPPY  F
Sbjct: 226 FYPYPPYGTF 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,184
Number of Sequences: 438
Number of extensions: 2556
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)