Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g05
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    24   4.7  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    24   6.3  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    24   6.3  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    24   6.3  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    23   8.3  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 300 EIKFIDLLNNIQNALIFITKIGQFISQFDMFPFKNS 193
           +I+++   +N  + L  IT   QFIS   + PF  S
Sbjct: 406 DIQYLSQNDNTNDVLYSITDSKQFISTIYILPFLKS 441


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 233 NSFHNSICFLLKIV*THTHGMI*IHRFIPNKTF 135
           +   N +CF L    T++ G+  + RF+ NK F
Sbjct: 53  SQLENILCFFLVYRTTYSFGVCLMKRFLFNKFF 85


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 19  KSHVFLWYGIIM*YQHFGS 75
           K  +FLWYGI+   ++ G+
Sbjct: 250 KGAIFLWYGILSFGEYLGA 268


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 270 IQNALIFITKIGQFISQFDMFPFKNSLNA-HTWNDI 166
           +Q +L  I+K G+ +      PFKN+ +A    NDI
Sbjct: 31  VQLSLQDISKFGKVVQLRSFIPFKNAAHALENANDI 66


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +2

Query: 188  FKLFLKGNISNCEMNCPI 241
            F++ L+G+++N  +NC +
Sbjct: 1049 FEMHLRGHLNNIRLNCEV 1066


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,663
Number of Sequences: 5004
Number of extensions: 24315
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)