Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g05
         (315 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21343| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)              27   3.2  
SB_2828| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.4  
SB_47417| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)             25   9.8  

>SB_21343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 219 FDMFPFKNSLNAHTWND 169
           +D  PFK+++N HTW +
Sbjct: 76  YDTLPFKSTINNHTWRE 92


>SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 8/23 (34%), Positives = 19/23 (82%)
 Frame = +2

Query: 218 NCEMNCPIFVINIKAF*ILLSKS 286
           NC ++CP+ ++N++A+ I++ +S
Sbjct: 3   NCVIDCPLMLLNVRAYSIIVIES 25


>SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 564

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 237 GQFISQFDMFPFKNSLNAHTWNDIDSSFYS*QNVY 133
           G+F  + D F   N  +A+TW D   S Y  + +Y
Sbjct: 276 GRFKLRMDFFHDANYQSAYTWGDFPVSVYLRERLY 310


>SB_2828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 303 NEIKFIDLLNNIQNALIFITKIGQFISQFDMF 208
           +E+K+ D +NN Q+AL    K G    Q + +
Sbjct: 194 SEVKYEDAMNNYQHALSLFQKTGDESGQANAY 225


>SB_47417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 185 AFKLFLKGNISNCEMNCPIF 244
           A +LFLK    N E+ CP F
Sbjct: 78  AARLFLKAEQENLELGCPAF 97


>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
          Length = 451

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 79  RSLSNNYE*ISN*GFTPLINVLLGIKR*IYIIPCVCV*TIFKRKHI 216
           R+   +Y  I N GF   I++  GIK  + I+P +    +++ K++
Sbjct: 406 RNYEVSYNKIRNLGFKATISIDDGIKELLKIVPLLSPEDVYRAKNV 451


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,610,257
Number of Sequences: 59808
Number of extensions: 140189
Number of successful extensions: 219
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)