Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g05
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine rece...    29   0.93 
AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical ...    26   6.6  

>U70858-9|AAB09181.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein36 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 30  FSMVWHYYVVPAFWFDSVFIK 92
           FS+V+  YVVP  +FDS F+K
Sbjct: 53  FSVVYLVYVVPMIFFDSSFMK 73


>AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical
           protein T08E11.1 protein.
          Length = 649

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 81  PNRTKMLVLHNNAIP*KNMTFSKILD 4
           PN+ K L++HN  I  K + F  I++
Sbjct: 151 PNKLKELIIHNKTIREKTIDFRDIVE 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,931,818
Number of Sequences: 27780
Number of extensions: 126848
Number of successful extensions: 208
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)