Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g05
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   2.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   2.7  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   4.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   8.1  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding
          protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 20 KVMFFYGMALLCSTSILV 73
          K  F Y +ALLC  +I V
Sbjct: 6  KQAFIYSLALLCLHAIFV 23


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
          protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 20 KVMFFYGMALLCSTSILV 73
          K  F Y +ALLC  +I V
Sbjct: 6  KQAFIYSLALLCLHAIFV 23


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 5/21 (23%), Positives = 13/21 (61%)
 Frame = +3

Query: 123 YAFNKRFVRNKTMNLYHSMCV 185
           + FN+   R + + + H++C+
Sbjct: 27  FHFNRYLTRRRRIEIAHALCL 47


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 293 NLLIYLTIFKTP*YLLQK*DNSFH 222
           N ++Y+   K    + Q  D+SFH
Sbjct: 199 NTMVYMVDNKNTLIIYQNADDSFH 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,622
Number of Sequences: 438
Number of extensions: 1624
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)