Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g05
         (315 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi...    26   6.1  
At5g43450.1 68418.m05312 2-oxoglutarate-dependent dioxygenase, p...    25   8.1  
At3g19190.1 68416.m02436 expressed protein                             25   8.1  

>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 939

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -1

Query: 273 NIQNALIFITKIGQFISQFDMFPFKNSLNAHTWNDIDSSFYS*QNVY*RRKTLITYLFII 94
           N +  LIF +K G  I++ + +  K S     WN + S F    +VY     L TYL  +
Sbjct: 214 NGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKKWNLVTSEFVG--SVY---PVLATYLLPL 268

Query: 93  V**RPNR 73
           +  RP R
Sbjct: 269 IILRPAR 275


>At5g43450.1 68418.m05312 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967)
          Length = 362

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 132 NKRFVRNKTMNLYHS 176
           NKRFV N   +LYHS
Sbjct: 130 NKRFVYNNDFDLYHS 144


>At3g19190.1 68416.m02436 expressed protein
          Length = 1861

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 149 E*NDESISFHVCAFKLFLKGNISNCEM 229
           E  D S+SF VC   L L+G +++ E+
Sbjct: 493 ELRDISVSFQVCLHDLRLEGEVNSMEI 519


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,205,435
Number of Sequences: 28952
Number of extensions: 107314
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)