Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11g02
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0) 197 7e-51
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 8e-33
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05) 34 0.089
SB_32882| Best HMM Match : tRNA_synt_1c_R2 (HMM E-Value=2.6) 32 0.47
SB_17290| Best HMM Match : tRNA_synt_1c_R2 (HMM E-Value=2.6) 32 0.47
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036) 29 2.5
SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6) 29 2.5
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 29 3.3
SB_40922| Best HMM Match : JmjC (HMM E-Value=0.092) 29 4.4
SB_43954| Best HMM Match : efhand (HMM E-Value=4.3e-23) 28 5.8
SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06) 28 5.8
SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62) 28 5.8
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097) 28 7.7
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_37673| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2) 28 7.7
>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
Length = 266
Score = 197 bits (480), Expect = 7e-51
Identities = 106/197 (53%), Positives = 129/197 (65%), Gaps = 2/197 (1%)
Frame = +2
Query: 71 MTTLRCVLMLVALAGATFAGPEVT-ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 247
M L +L +VA +G E ELK EVVS PE CT K+ GD L+MHYTG L +G+
Sbjct: 1 MKGLMNLLAIVAFSGLALGAEEPKGELKIEVVSKPEKCTRKTHVGDTLSMHYTGRLANGN 60
Query: 248 KFDSSYDRDQPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPH 427
KFDSS DR + F F +G G VI+GW+QGLLDMC+GEKRKLTIP L YGE GAG IPPH
Sbjct: 61 KFDSSLDRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPH 120
Query: 428 ATLHFEVELINI-GDSPPATNVFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIK 604
ATL+ +VEL+ I G NVF ID + D +L++EEV +YLK+Q GG S+D
Sbjct: 121 ATLYMDVELVEIQGSKESDPNVFGMIDKNNDKVLTQEEVKNYLKEQ-----GGMPSDD-- 173
Query: 605 QMLESHDKLVEEIFQHE 655
SHD +V EIFQ E
Sbjct: 174 --EASHDTIVSEIFQQE 188
>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 137 bits (331), Expect = 8e-33
Identities = 69/178 (38%), Positives = 110/178 (61%), Gaps = 7/178 (3%)
Frame = +2
Query: 143 ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRD---QPFTFQIGVGQVI 313
+++ E VP C K+K GD + +HYTG + DG FD++ D QPF F IG G VI
Sbjct: 99 KIEVEETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVI 158
Query: 314 KGWDQGLLDMCVGEKRKLTIPASLGYGERGA----GNVIPPHATLHFEVELINIGDSPPA 481
KG++QG+ MCVG+KRK+ IP +L YG++G+ GN+ + TL + +EL ++ PP
Sbjct: 159 KGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLELFDVRKPPPH 218
Query: 482 TNVFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHE 655
+++F +D + D LSREEVS Y++KQ A+ ++ H+++V+ +F++E
Sbjct: 219 SDMFSHMDENGDRKLSREEVSAYMRKQ---AEAQFAPTYDQRWQHHHERMVDNVFEYE 273
>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
Length = 639
Score = 34.3 bits (75), Expect = 0.089
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +2
Query: 200 GDMLTMHYTGTLDD----GHKFDSSYDRDQPFTFQIGVGQVIKG 319
GD + + YTG L + G FDS+ D+ F F+ G G+VIKG
Sbjct: 122 GDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165
>SB_32882| Best HMM Match : tRNA_synt_1c_R2 (HMM E-Value=2.6)
Length = 170
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +2
Query: 464 GDSPPATNVFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLES 619
GD P+ N + ++ ++ L+ EE++ + ++++ GG+ SE I++ ES
Sbjct: 43 GDKKPSANFLEFLNTLQETPLTLEELARAVDREILTEAGGQASERIREFDES 94
>SB_17290| Best HMM Match : tRNA_synt_1c_R2 (HMM E-Value=2.6)
Length = 231
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +2
Query: 464 GDSPPATNVFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLES 619
GD P+ N + ++ ++ L+ EE++ + ++++ GG+ SE I++ ES
Sbjct: 54 GDKKPSANFLEFLNTLQETPLTLEELARAVDREILTEAGGQASERIREFDES 105
>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 526 EHVVLIGVDFLEHVCGRWRVTDVDQLHFEMQCSVGRNHVAGSALSVTQGC 377
E V+ + V +E V R + DV QLH + + S+GR V+ L C
Sbjct: 181 ESVIAVRVHLVECVWFRLPILDVQQLHVKYERSLGRELVSNLLLFCDVWC 230
>SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036)
Length = 633
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 491 FKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSE 595
F E+D +KD+++SREE +Y +++ G E+ +
Sbjct: 576 FDEVDVNKDSLISREEFINYQQEKYKRLMGREMPD 610
>SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 1053
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 278 VDRDHSSSRTCVRRLACQCSAW*AYRRAWTSWC 180
V D SS C R C W +AW WC
Sbjct: 956 VSPDASSFEYCARNRRCASQRWKDSAKAWLLWC 988
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 488 VFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVE 637
+F+EID D + E+S+ LKK + ++ +K M ++D ++
Sbjct: 73 IFQEIDEDNSGYIDHNEISNALKKLDINLPSRQIDGILKGMDLNNDNRID 122
>SB_40922| Best HMM Match : JmjC (HMM E-Value=0.092)
Length = 403
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 491 FKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSE 595
F E+DADKD ++ EE+ + + GG V E
Sbjct: 340 FAEVDADKDGFVTPEEMMSLHSRDLERLLGGTVQE 374
>SB_43954| Best HMM Match : efhand (HMM E-Value=4.3e-23)
Length = 308
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 488 VFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVE 637
+ +E+D +KD ++ EE++D++K V D+K+ + D V+
Sbjct: 76 LIREVDNNKDGAVTTEELTDWVKGVFKKRSMEGVDNDLKEKDANEDGKVD 125
>SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)
Length = 813
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/69 (27%), Positives = 27/69 (39%)
Frame = -3
Query: 565 HLLLQIVAHFFAGEHVVLIGVDFLEHVCGRWRVTDVDQLHFEMQCSVGRNHVAGSALSVT 386
H L H F E + VDF+ C WR+ + Q + G + S L +
Sbjct: 734 HRLFLYGIHGFFDEIMFTATVDFIASGCSDWRLRGHSSMWSLFQYAFGSYLIERSFLFLK 793
Query: 385 QGCGNSQFT 359
Q S+FT
Sbjct: 794 QNTALSRFT 802
>SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)
Length = 375
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -1
Query: 387 PKDAGIVSLRFSPTHMSSKPWSHPLITC 304
PK G S H SS W HP ++C
Sbjct: 257 PKSHGAASPSLMGQHFSSLMWQHPQVSC 284
>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -3
Query: 499 FLEH-VCGRWRVTDVDQLHFEMQCSVGRNHVAGSALS--VTQGCGNSQFTFLTNAHVKQA 329
F++H V R V+ ++ ++ E+ + + +S V QG Q L NA+ +
Sbjct: 444 FIKHSVLDRLHVSGLE-VNLELSTMLATQTINSQKISGLVVQGVNEKQDIHLPNAYTRDC 502
Query: 328 LVPSLDHLPNANLERK 281
+ DH+P R+
Sbjct: 503 IPAQRDHIPTPESARR 518
>SB_25787| Best HMM Match : Asparaginase_2 (HMM E-Value=0.097)
Length = 1623
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -2
Query: 269 DHSSSRTCVRRLACQCSAW*AYRRAWTSWC 180
D SS C R C W +AW WC
Sbjct: 1050 DASSFEYCARNRRCASQRWKDSVKAWLLWC 1079
>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 131 PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 247
P T K +++ P+G TK +HG++ T+ + DG+
Sbjct: 51 PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGN 87
>SB_37673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 485 NVFKEIDADKDNMLSREEVSDYLKKQMVPADGGEVSE 595
++ KE D +KD LS EE+ LK V D GE E
Sbjct: 60 HMIKEADDNKDGKLSMEEI---LKHSSVFVDNGETPE 93
>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
Length = 466
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 131 PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 247
P T K +++ P+G TK +HG++ T+ + DG+
Sbjct: 165 PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGN 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,923,598
Number of Sequences: 59808
Number of extensions: 446897
Number of successful extensions: 1185
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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