Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g01
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    62   1e-10
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    31   0.17 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    31   0.17 
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    29   0.52 
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    27   2.8  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    27   2.8  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   3.7  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   8.5  

>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 20/124 (16%)
 Frame = +3

Query: 423 PWQAYTQKVSSKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNI----GSFFNFFXX 590
           P + Y +KV+     +DP+QE  V+ + ++Y E+ +Y +P I + ++    GS  ++   
Sbjct: 36  PIEVYNKKVNDGVWKRDPYQETAVKAINRLYTELESYTQPPITQDSMPAEKGSILSWISP 95

Query: 591 XXXXXXXXXX--------------GVYIWGSVGGGKTMLMDLFYDTVP--IKEKLRVHFN 722
                                   G+Y++G VG GKT LMDLFY  +P  +    R+HF+
Sbjct: 96  LKKMFSRKKSPTLTSSLPVPGMPKGIYLYGDVGCGKTALMDLFYHNLPPNVTRSQRIHFH 155

Query: 723 SFML 734
           +FM+
Sbjct: 156 AFMM 159


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +3

Query: 396 HAQHFVNDGPWQAYTQKVSSKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFF 575
           HA   + D  W+ +    S K LS   H+   + + Q  YQ++S     I+   N  SFF
Sbjct: 117 HALKPLLDTAWEIFDSSPSLKTLSM-LHKSFNLHNFQSFYQKLSLDSSLILALNNFWSFF 175

Query: 576 NFF 584
           N +
Sbjct: 176 NLY 178


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 659 CFTTPNTTPDVNTFGSINLYWVWLLEEI 576
           C T+  T+PD  TFG++   W  LL+++
Sbjct: 70  CLTSSPTSPDSCTFGNMTFQWTSLLQDV 97


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 704 LFFNWHSIIKQIH*HCFTTPNTT-PDVNTFGSINLYWVWLLEEIKKRSYVLF 552
           +F  W  ++ +   H     ++T P+V +FGS+  YWV L   ++     LF
Sbjct: 140 IFARWSLLVGECCAHATARYDSTDPNVASFGSVAQYWVSLFSNVQSSLDDLF 191


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 459 ALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIG 566
           A SK  H E VV+ L+     + N E   + +QNIG
Sbjct: 48  ATSKSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIG 83


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
 Frame = -3

Query: 217 GKHSTLNIISLVKSQH*NRHVKPYLPFCM-------TFHLGVYLLFLRDDFKYTCLNLQ 62
           G HS  +++SL K     RHV+P +   +       TF  G YL+ + D    T  NL+
Sbjct: 48  GNHSVADLMSLGKDMLGKRHVQPNVVHLLHEIMIEATFPDGTYLITIHDPICTTDGNLE 106


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 620 FGSINLYWVWLLEEIKKRSYVLFLYYGPLIITNLLIYFLQMLH 492
           FG I  ++  LL     RS+ LF+ + P+IIT   I  +  LH
Sbjct: 127 FGKIKQFFNILL-----RSFNLFIIFSPIIITLPFIALISFLH 164


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 271 F*DTK*FSLYNLLFFHNLGKHSTLNIISLVKS 176
           F + K  SLY+L+  +NL   ++++  SLVKS
Sbjct: 335 FDENKYLSLYDLIHDNNLFTKASISTTSLVKS 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,539
Number of Sequences: 5004
Number of extensions: 57755
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)