Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g01
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25750| Best HMM Match : AFG1_ATPase (HMM E-Value=5.6e-12)           66   2e-11
SB_1911| Best HMM Match : AFG1_ATPase (HMM E-Value=1.8e-26)            33   0.32 
SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)                 28   9.1  
SB_1524| Best HMM Match : 7tm_6 (HMM E-Value=0.51)                     28   9.1  

>SB_25750| Best HMM Match : AFG1_ATPase (HMM E-Value=5.6e-12)
          Length = 424

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = +3

Query: 621 GVYIWGSVGGGKTMLMDLFYDTVPIKEKLRVHFNSFML 734
           G+Y++G VG GKT+LMD+FYDTVPIK K RVHF SFML
Sbjct: 10  GLYLYGGVGSGKTILMDMFYDTVPIKSKRRVHFYSFML 47


>SB_1911| Best HMM Match : AFG1_ATPase (HMM E-Value=1.8e-26)
          Length = 392

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 411 VNDGPWQAYTQKVSSKALSKDPHQERVVQHLQKVYQ 518
           +  GP + Y + V S  LS D HQ ++V+ LQ++++
Sbjct: 45  ITKGPLRDYDELVESGQLSIDKHQRQIVEKLQEIHK 80


>SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
          Length = 413

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 251 KLLCVSKRKKIDDNKQNVQTKFNLSCFHVFDASDEALQ*VY 373
           K+ C   RKK++++ +    K + SC   F+ SD+ L+  Y
Sbjct: 210 KIYCT--RKKLEEHLKKFHKKCDCSCEEFFETSDDYLEHYY 248


>SB_1524| Best HMM Match : 7tm_6 (HMM E-Value=0.51)
          Length = 407

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 521 LLIYFLQMLHYTFLMRIFA*CLAAHFLSVCLPRSIVYEVLCVS 393
           L ++    +H++ L R+F    A + ++V     +++ V CVS
Sbjct: 295 LAVFAFDAMHFSLLSRVFRGAPAGYIVTVLFMNFLIFLVPCVS 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,857,792
Number of Sequences: 59808
Number of extensions: 402388
Number of successful extensions: 963
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)