Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g01
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-2|AAK85448.1|  445|Caenorhabditis elegans Hypothetical ...    80   2e-15
Z49909-17|CAD60413.1|  303|Caenorhabditis elegans Hypothetical p...    30   1.5  
AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical...    28   6.0  
AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine re...    28   7.9  

>AC006610-2|AAK85448.1|  445|Caenorhabditis elegans Hypothetical
           protein C30F12.2 protein.
          Length = 445

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
 Frame = +3

Query: 432 AYTQKVSSKALSKDPHQERVVQHLQKVYQEISNYE---RPIIQEQNIGSFFNFFXXXXXX 602
           AY++KV+   L +D +Q +++   +++ +EI +Y+   +  I E++   F+  F      
Sbjct: 24  AYSKKVNEGTLKEDDYQRKMIVDFERLRKEIESYQPTNKSNISEKSSSRFWKMFQNSKVD 83

Query: 603 XXXXXX--GVYIWGSVGGGKTMLMDLFYDTVPIKEKLRVHFNSFMLN 737
                   G+Y++GSVG GKTMLMDLF++  PI +K RVHFN FM N
Sbjct: 84  TPKIISPRGIYLYGSVGCGKTMLMDLFFENCPIDKKRRVHFNDFMQN 130


>Z49909-17|CAD60413.1|  303|Caenorhabditis elegans Hypothetical
           protein C14A4.15 protein.
          Length = 303

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 317 NLSCFHVFDASDEALQ*VYEIIIISDSRTALRKRWTLASIHS 442
           +L  FHVFD S +A Q V  ++ +S    AL   W L  + S
Sbjct: 236 SLLAFHVFDLSAKAYQIVLWLLTVSADAFALSNPWLLFCLSS 277


>AC024859-16|AAK29984.1|  375|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.20a protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +3

Query: 405 HFVND---GPWQAYTQKVSSKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFF 575
           +F+N    GP+  ++ ++ +  +S  PH ++V   + K+Y+     + P++Q    GS F
Sbjct: 242 NFINQTKTGPFHEHSNQLWN--ISAVPHWKKVNSGMFKMYEGEVLKKFPVVQHMMFGSLF 299

Query: 576 NF 581
           +F
Sbjct: 300 SF 301


>AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine
           receptor, class w protein6 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 300 FCLLSSIFFLFETQSSFHYIIYCFFIT 220
           F  L+SI  LF   SSF +I  CFF++
Sbjct: 316 FMHLNSITLLFLMASSFSHIFVCFFMS 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,288,479
Number of Sequences: 27780
Number of extensions: 316090
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)