Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g01
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.2  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   6.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   6.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.1  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 480 QERVVQHLQKVYQEISNYERPIIQEQNIGSFFN 578
           Q+ V+Q LQK+ Q I N E      QN+G+ ++
Sbjct: 33  QQDVIQLLQKISQPIPNQEL-----QNLGASYD 60



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 453 SKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNI 563
           S+   ++  Q RV  HL+++  +   Y+  +  EQN+
Sbjct: 494 SQQQQEEQTQSRVRAHLKRLDHQPYQYKIAVHSEQNV 530


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 223 NLGKHSTLNIISLVKSQH*NRHVKPYLPFCM 131
           N G++S L +  L K +     ++ Y+P CM
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIYIPCCM 254


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 223 NLGKHSTLNIISLVKSQH*NRHVKPYLPFCM 131
           N G++S L +  L K +     ++ Y+P CM
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIYIPCCM 254


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 246 YIIYCFFITLVSIQH*TLYRWSNHNIEI 163
           YII  F I+        +Y+W+N  + I
Sbjct: 76  YIIRMFLISQQKTSKLKIYKWNNQILHI 103


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 246 YIIYCFFITLVSIQH*TLYRWSNHNIEI 163
           YII  F I+        +Y+W+N  + I
Sbjct: 59  YIIRMFLISQQKTSKLKIYKWNNQILHI 86


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +3

Query: 186 NDIMFNVECLPRL*KNNRLYNENYFVSQKEKK*MTINKMFKRNSIYHAS 332
           ND++ N  C     ++N  YN N+  ++   K    N     +  +H+S
Sbjct: 406 NDLIRNSRCANFDNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSS 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,075
Number of Sequences: 438
Number of extensions: 4006
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)