Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11g01
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30490.1 68417.m04329 AFG1-like ATPase family protein contain...    57   1e-08
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain...    50   1e-06
At2g25530.1 68415.m03056 AFG1-like ATPase family protein contain...    45   5e-05
At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containi...    30   1.4  
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro...    29   4.3  
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa...    28   7.4  
At1g23590.1 68414.m02970 expressed protein contains Pfam profile...    27   9.8  

>At4g30490.1 68417.m04329 AFG1-like ATPase family protein contains
           Pfam profile: PF03969 AFG1-like ATPase
          Length = 497

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
 Frame = +3

Query: 420 GPWQAYTQKVSS-KALSKDPHQERVVQHLQKVYQEISN------YERPIIQEQNIGSFFN 578
           GP   Y +++S+ + ++ D  Q   ++ LQ++Y E+ +       +R    +++  S + 
Sbjct: 89  GPLVEYERRISNGELMTGDICQISALRELQRLYDELVDSVDTCRLDRYNTSDKSSRSRWF 148

Query: 579 FFXXXXXXXXXXXXGVYIWGSVGGGKTMLMDLFYDTVPIK-EKLRVHFNSFMLN 737
           +             G+Y++G VG GKTMLMDLF+D +P   +K R+HF+ FML+
Sbjct: 149 WSRLMPQTSYSPVKGLYLYGGVGTGKTMLMDLFFDQLPCTWKKQRIHFHDFMLS 202


>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
           Pfam profile: PF03969 AFG1-like ATPase
          Length = 464

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
 Frame = +3

Query: 420 GPWQAYTQK-VSSKALSKDPHQERVVQHLQKVYQEI------SNYERPIIQEQNIGSFFN 578
           GP   Y ++ V+ + L  D  Q   ++ LQ++Y E+         +R     ++  S + 
Sbjct: 61  GPLVEYERRIVAGELLDGDLCQLGTLRELQRLYDELVQSADACRLDRYSASAKSTRSNWF 120

Query: 579 FFXXXXXXXXXXXXGVYIWGSVGGGKTMLMDLFYDTVPIKEKL-RVHFNSFMLN 737
           +             G+Y++G VG GKTMLMDLF+  +P   +  R+HF++FML+
Sbjct: 121 WNKFVSHSSVSPVKGLYLYGGVGTGKTMLMDLFFHQLPASWRTQRIHFHNFMLS 174


>At2g25530.1 68415.m03056 AFG1-like ATPase family protein contains
           Pfam profile: PF03969 AFG1-like ATPase
          Length = 655

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
 Frame = +3

Query: 621 GVYIWGSVGGGKTMLMDLFYDTVP--IKEKLRVHFNSFML 734
           G+YI+G+VG GKTMLMD+FY      I+ + R HF+  ML
Sbjct: 243 GLYIYGNVGCGKTMLMDMFYGATDGIIRHRQRFHFHEAML 282



 Score = 31.9 bits (69), Expect = 0.46
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 420 GPWQAYTQKVSSKALSKDPHQERVVQHLQKVYQEISNYER 539
           GP   Y++ V    L  DP+QE+VV   + ++  + ++E+
Sbjct: 111 GPLTNYSKLVEQGRLQHDPYQEKVVSAFENLFGRLEHFEK 150


>At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containing
           protein glutamine-rich tetratricopeptide repeat (TPR)
           containing protein (SGT) - Rattus
           norvegicus,PID:e1285298 (SP|O70593); contains Pfam
           profile PF00515 TPR Domain
          Length = 426

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 420 GPWQAYTQKVSSKALSKDPHQERVVQHLQKVYQEISNYERPIIQEQNIGSFF 575
           G +    +K   KAL  DPH E V ++++   Q+I   ++   + QN  +F+
Sbjct: 257 GKYAEAIEKGFKKALLLDPHNESVKENIRVAEQKIREEQQRQRRSQNTSTFY 308


>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
           protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
           contains Zinc finger C-x8-C-x5-C-x3-H type domain
           (PF00642); identical to zfwd3 protein (GP:12057168)
           {Arabidopsis thaliana}
          Length = 472

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +3

Query: 360 CN--KCMRLLSSQTHAQHFVNDGPWQAYTQKVSSKAL----SKDPHQERVV 494
           CN  +C+R ++ Q  A   +++GPW       + KA     SKD H E VV
Sbjct: 216 CNSGQCVRSINLQAEAGSLISEGPWVFLGLPNAVKAFNVQNSKDVHLEGVV 266


>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
           domain
          Length = 537

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 288 TINKMFKRNSIYHASM-FLMHQTKLCNKCMRLLSSQTHAQHFVNDGPWQAY 437
           T++K   +N     +M +++ +TK C KC R +   T   H     P + Y
Sbjct: 273 TVSKWLLKNKDESENMNWILAKTKPCPKCKRPIEKNTGCNHMSCSAPCRHY 323


>At1g23590.1 68414.m02970 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 217

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 182 QITTLKSTC*AVFTVLYDIPPRRLFVIFT 96
           ++TT K  C     + + +PPR +F +FT
Sbjct: 56  KVTTKKGLCHMYIELTFGLPPRSVFELFT 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,901,816
Number of Sequences: 28952
Number of extensions: 276487
Number of successful extensions: 702
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)