BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11f22 (586 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 239 7e-64 At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 231 3e-61 At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam... 34 0.080 At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ... 29 3.0 At1g68190.1 68414.m07790 zinc finger (B-box type) family protein 28 5.3 At1g32960.1 68414.m04059 subtilase family protein contains simil... 28 5.3 At1g32940.1 68414.m04057 subtilase family protein contains simil... 28 5.3 At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 9.2 >At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribosomal protein S23, Fragaria x ananassa, PIR:S56673 Length = 142 Score = 239 bits (586), Expect = 7e-64 Identities = 110/143 (76%), Positives = 125/143 (87%) Frame = +2 Query: 62 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 241 MGK RG+ RK R QRWADK++KK+H+G +WK PF G+SHAKGIVLEK+G+EAK Sbjct: 1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59 Query: 242 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 421 QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF Sbjct: 60 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119 Query: 422 KVVKVANVSLLALYKEKKERPRS 490 KVVKV+ VSLLAL+KEKKE+PRS Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142 >At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar to 40S ribosomal protein S23 (S12) GB:P46297 from [Fragaria x ananassa] Length = 142 Score = 231 bits (564), Expect = 3e-61 Identities = 108/143 (75%), Positives = 122/143 (85%) Frame = +2 Query: 62 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 241 MGK RG+ RK R QRWADK +KK++ G +WK PF +SHAKGIVLEK+G+EAK Sbjct: 1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59 Query: 242 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 421 QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF Sbjct: 60 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119 Query: 422 KVVKVANVSLLALYKEKKERPRS 490 KVVKV+ VSLLAL+KEKKE+PRS Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142 >At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family protein Length = 125 Score = 33.9 bits (74), Expect = 0.080 Identities = 24/65 (36%), Positives = 38/65 (58%) Frame = +2 Query: 239 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 418 K+PNSA RK +V+L N + A +P +G ++ +E+ VL+ G GR V D PGV+ Sbjct: 43 KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94 Query: 419 FKVVK 433 ++ Sbjct: 95 SHCIR 99 >At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to MtN3 GI:1619602 (root nodule development) from [Medicago truncatula] Length = 289 Score = 28.7 bits (61), Expect = 3.0 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = +2 Query: 425 VVKVANVSLLALYKEKKERPRS*VYIVISDLLSGSALFI 541 VV++ +SL Y KKE+ + +++ D+L A+F+ Sbjct: 80 VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIFV 118 >At1g68190.1 68414.m07790 zinc finger (B-box type) family protein Length = 356 Score = 27.9 bits (59), Expect = 5.3 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -2 Query: 378 PNPATSTSSFSSMWFRQP-SRGTNAVTFFPFLMSCTR 271 P PA+ST SFSS P S ++F P L + TR Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336 >At1g32960.1 68414.m04059 subtilase family protein contains similarity to subtilase; SP1 GI:9957714 [Oryza sativa] Length = 777 Score = 27.9 bits (59), Expect = 5.3 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +2 Query: 125 WADKEFKKAHMGTKWKANPFGGASHAKG 208 W+ F+ A + T W+ +PFG A+G Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602 >At1g32940.1 68414.m04057 subtilase family protein contains similarity to subtilase; SP1 GI:9957714 from [Oryza sativa] Length = 774 Score = 27.9 bits (59), Expect = 5.3 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +2 Query: 125 WADKEFKKAHMGTKWKANPFGGASHAKG 208 W+ F+ A + T W+ +PFG A+G Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599 >At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At4g08880, At1g34730, At1g27790, At1g34740, At1g27780, At5g36850, At3g42730, At1g52020, At3g24390, At1g25886, At4g03300 Length = 1312 Score = 27.1 bits (57), Expect = 9.2 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +2 Query: 287 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 448 K KK + VP+ + E D+V GF K V D+P + +VV + NVS Sbjct: 819 KEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,704,681 Number of Sequences: 28952 Number of extensions: 302947 Number of successful extensions: 759 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 740 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 757 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1151426952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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