Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f20
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 196 2e-51
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 72 7e-14
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 72 7e-14
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 71 9e-14
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 68 1e-12
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 67 2e-12
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 64 1e-11
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 54 1e-08
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 48 7e-07
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 48 1e-06
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 48 1e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 43 4e-05
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 42 6e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 38 0.001
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 38 0.001
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 1.1
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 2.6
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 27 2.6
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 26 4.5
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 26 4.5
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 25 6.0
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 6.0
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 6.0
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 7.9
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 196 bits (478), Expect = 2e-51
Identities = 91/142 (64%), Positives = 105/142 (73%)
Frame = +1
Query: 151 QSQCANVRNSTVLSGLTPLSIILKRHYAEKQIFERTKPHCNVGTIGHVDHGKTTLTAAIT 330
+ C + + SGL + R YA++++F R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 15 RKNCLRLNRISFASGLINRFTVPARTYADEKVFVRKKPHVNIGTIGHVDHGKTTLTAAIT 74
Query: 331 KVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMI 510
K LSDL A Y+ ID APEEKARGITI+ AHVEY+T RHY H DCPGHADYIKNMI
Sbjct: 75 KCLSDLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMI 134
Query: 511 TGTAQMDGAILVVAATDGVMPQ 576
TG A MDGAI+VV+ATDG MPQ
Sbjct: 135 TGAATMDGAIIVVSATDGQMPQ 156
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 71.7 bits (168), Expect = 7e-14
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 15/119 (12%)
Frame = +1
Query: 253 RTKPHCNVGTIGHVDHGKTTLTAAIT---------------KVLSDLNLAQKKGYADIDN 387
+ K H NV IGHVD GK+T T + K ++L K +D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 388 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 564
E+ RGITI++A +++T + + D PGH D+IKNMITGT+Q D AIL++ G
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTG 121
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 71.7 bits (168), Expect = 7e-14
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 15/119 (12%)
Frame = +1
Query: 253 RTKPHCNVGTIGHVDHGKTTLTAAIT---------------KVLSDLNLAQKKGYADIDN 387
+ K H NV IGHVD GK+T T + K ++L K +D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 388 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 564
E+ RGITI++A +++T + + D PGH D+IKNMITGT+Q D AIL++ G
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTG 121
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 71.3 bits (167), Expect = 9e-14
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 15/119 (12%)
Frame = +1
Query: 253 RTKPHCNVGTIGHVDHGKTTLTAAIT---------------KVLSDLNLAQKKGYADIDN 387
+ K H NV IGHVD GK+T T + K ++L K +D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 388 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 564
E+ RGITI++A +++T + + D PGH D+IKNMITGT+Q D A+L++ G
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTG 121
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 67.7 bits (158), Expect = 1e-12
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Frame = +1
Query: 259 KPHCNVGTIGHVDHGKTTLTAAIT------------KVLSDLNLAQKKGYA---DIDNAP 393
K H N+ IGHVD GK+TL I K+ + A K+ + +D+
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 394 EEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 564
EE+ +G T+ V ++TE R + D PGH Y+ NMI G +Q D +LV++A G
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 352
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 67.3 bits (157), Expect = 2e-12
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Frame = +1
Query: 241 QIFERT--KPHCNVGTIGHVDHGKTTLTAAITKVLSDLN--LAQK---------KG---Y 372
+IFE++ KP ++ GHVD GK+T+ I L ++N QK KG Y
Sbjct: 167 EIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSY 226
Query: 373 A-DIDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVV 549
A +D EE+ARG+T++VA ++++++ Y D PGH D+I MI G + D A+LVV
Sbjct: 227 AWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVV 286
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 64.5 bits (150), Expect = 1e-11
Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Frame = +1
Query: 271 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYAD-----IDNAPEEKARGITINVAHV 435
NVG I H+D GKTTLT K+L G D +D P E+ RGITIN A +
Sbjct: 30 NVGIIAHIDAGKTTLTE---KMLYYGGFTSHFGNVDTGDTVMDYLPAERQRGITINSAAI 86
Query: 436 EYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 576
+ + D PGHAD+ + A +DGA+ ++ + GV Q
Sbjct: 87 SFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQ 133
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 54.0 bits (124), Expect = 1e-08
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Frame = +1
Query: 271 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINV---AHVEY 441
N I H+DHGK+TL+ I K+ +N + +D E+ RGIT+ + + Y
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQF-LDKLEVERRRGITVKAQTCSMIYY 118
Query: 442 QTEQRHYGHT-DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 576
Q + + D PGH D+ ++ A +G IL+V A+ G+ Q
Sbjct: 119 YHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGIQAQ 164
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 48.4 bits (110), Expect = 7e-07
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 22/119 (18%)
Frame = +1
Query: 271 NVGTIGHVDHGKTTLTAAITKVLS-------DLNLAQKKGYAD--IDNAPEEKA------ 405
N+GTIGHV HGK+T+ AI+ V + + N+ K GYA+ I E+
Sbjct: 25 NIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCSNEECPRPGCY 84
Query: 406 RGITINVA-HVEYQTEQ------RHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATD 561
R + N H + RH DCPGH + M+ G A MD A+L++A +
Sbjct: 85 RSYSSNKEDHPPCEICNSPMNLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNE 143
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 48.0 bits (109), Expect = 1e-06
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Frame = +1
Query: 271 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 450
N+ I HVDHGK+TLT ++ + ++ A+ +D +E+ RG+TI + E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISLFAE 80
Query: 451 QRH----------------YGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 576
D PGH D+ + DGA++VV +GV Q
Sbjct: 81 MTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQ 138
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 48.0 bits (109), Expect = 1e-06
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Frame = +1
Query: 271 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 450
N+ I HVDHGK+TLT ++ + ++ A+ +D +E+ RG+TI + E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISLFAE 80
Query: 451 QRH----------------YGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 576
D PGH D+ + DGA++VV +GV Q
Sbjct: 81 MTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQ 138
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 42.7 bits (96), Expect = 4e-05
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
Frame = +1
Query: 250 ERTKPHCNVGTIGHVDHGKTTLTAAI---TKVLSDLNLAQKKGY--ADIDNAPEEKARGI 414
+R K N+G H+D GKTT T + T + D++ + K A +D E+ +GI
Sbjct: 54 KRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGI 113
Query: 415 TINVA-----------HVEYQTEQR-------HYGHTDCPGHADYIKNMITGTAQMDGAI 540
TI A +E +Q+ + D PGH D+ + +DGA+
Sbjct: 114 TIQSAATHCTWERTVDQIEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAV 173
Query: 541 LVVAATDGVMPQ 576
LV+ A GV Q
Sbjct: 174 LVLCAVSGVQSQ 185
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 41.9 bits (94), Expect = 6e-05
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Frame = +1
Query: 271 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEY--- 441
N + HVDHGKTTL ++ ++ +D +E RGIT+ + +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 442 ---QTEQRHYGHT------DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 576
Q +++ D PGH D+ + + + DGA ++V A +GV Q
Sbjct: 81 VISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEGVCSQ 134
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 37.9 bits (84), Expect = 0.001
Identities = 33/101 (32%), Positives = 41/101 (40%)
Frame = +1
Query: 274 VGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQ 453
V +GHVDHGKTTL A K S + + G +K T V +
Sbjct: 174 VTLMGHVDHGKTTLLDAFRK--STIASTEHGGIT-------QKIGAFT-----VPFDKGS 219
Query: 454 RHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 576
+ D PGH + G D +LVVA DGV PQ
Sbjct: 220 KFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDGVKPQ 260
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 37.5 bits (83), Expect = 0.001
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Frame = +1
Query: 286 GHVDHGKTTLTAAITKVLS-DLNLAQKKG--YADIDNAPEEKARGIT---INVAHVEYQT 447
GH+ HGK+ L + D +++ Y D E+ I + +A + +
Sbjct: 147 GHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMSIKSTPLTLAVSDMKG 206
Query: 448 EQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVM 570
+ + D PGH D++ + A DG +LVV +GVM
Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVM 247
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.9 bits (59), Expect = 1.1
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Frame = +1
Query: 283 IGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNA---PEEKARGITINVAHVEYQTEQ 453
+GHVD GKT L + + S++ + G A P E + T V + + + +
Sbjct: 490 LGHVDTGKTKLLDNLRR--SNVQEGEAGGITQQIGATYFPIESIKQKT-KVVNKKGKLQY 546
Query: 454 RHYGHT--DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 576
G D PGH + GT+ + AILV+ G+ PQ
Sbjct: 547 NIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVIDIMHGLEPQ 589
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.6 bits (56), Expect = 2.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 259 KPHCNVGTIGHVDHGKTTLTAAITKVL 339
KP +G +G GK+TLT A+ +++
Sbjct: 1249 KPQEKIGIVGRTGAGKSTLTLALFRLI 1275
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 472 DCPGHADYIKNMITGTAQ 525
D HADY K MITG A+
Sbjct: 715 DMHSHADYFKEMITGYAK 732
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/54 (20%), Positives = 29/54 (53%)
Frame = -2
Query: 522 CCACNHVLNVVSMTWAVSVSIMPLFCLVFNMSHINSDTSSLLLGGIVNICITFF 361
C + +++V++ W +++M LF N + + + + ++LG V C+ ++
Sbjct: 445 CGKFSKPISIVAVAWLWFMALMLLFPSYQNPNKVEMNWAIVVLGFTVFFCVGYY 498
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 247 FERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADI 381
F+ K C +GHVD + L A ++ ++ L KKG+ +I
Sbjct: 156 FQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNI 200
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 298 DQHVRLCQHCNGALYVQKFVFLHN 227
D H+R+ G Y+++FV HN
Sbjct: 475 DYHIRITFLAKGTEYIERFVKAHN 498
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 391 PEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMIT 513
PE K R IN A +YQ E G T ++ + N+IT
Sbjct: 311 PEIKVR---INAALAKYQAELHSLGDTPVGDNSSIVLNLIT 348
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 313 LTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQRHYG 465
+ A IT S + L I N+ +K + N++H + T RH+G
Sbjct: 529 ILAKITCFCSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVTFSRHFG 579
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 427 AHVEYQTEQRHYGHTDCPGHAD 492
AH YQT+ HY T H D
Sbjct: 266 AHPIYQTQHSHYDETPTSHHPD 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,126
Number of Sequences: 5004
Number of extensions: 47683
Number of successful extensions: 158
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -