Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f20
(577 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 56 2e-08
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 54 6e-08
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 48 4e-06
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 47 1e-05
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 44 9e-05
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 43 2e-04
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 43 2e-04
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 43 2e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14) 35 0.055
SB_37376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 31 0.89
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 30 1.6
SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25) 29 2.1
SB_25250| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1) 29 2.7
SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5) 28 4.8
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 28 6.3
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +1
Query: 379 IDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAAT 558
+D EE+ +G T+ V + T+ +H+ D PGH ++ NMI+G Q D +LV++A
Sbjct: 197 LDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISAR 256
Query: 559 DG 564
G
Sbjct: 257 KG 258
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 54.4 bits (125), Expect = 6e-08
Identities = 24/50 (48%), Positives = 35/50 (70%)
Frame = +1
Query: 379 IDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQM 528
+D E+ RGITI++A +++T + + D PGH D+IKNMITGT+QM
Sbjct: 12 LDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQM 61
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/49 (48%), Positives = 30/49 (61%)
Frame = +1
Query: 418 INVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 564
++V +QT+ + D PGH D+I NMITG AQ D AILVV A G
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITG 49
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 47.2 bits (107), Expect = 1e-05
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Frame = +1
Query: 271 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQT- 447
N+G +GHVD GKT+L A++ S A D P+ + RGIT+++ +Q
Sbjct: 37 NIGVLGHVDSGKTSLAKALSTTAST---------ASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 448 ---EQRHYGH---------TDCPGHADYIKNMITGTAQMDG 534
R G DCPGHA IK +I G AQ+ G
Sbjct: 88 LPEHLRSAGSEHDLLQMTLVDCPGHASLIKTII-GGAQIIG 127
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 44.0 bits (99), Expect = 9e-05
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Frame = +1
Query: 277 GTIGHVDHGKTTLT-------AAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHV 435
G I H D GKTTLT AI + + + KKG A D E+ RGI++ + +
Sbjct: 14 GIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSNKIKKG-ATSDFMEIERQRGISVATSVL 72
Query: 436 EYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 576
+ + D PGH D+ ++ +D I+V+ GV Q
Sbjct: 73 AFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKGVEEQ 119
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/101 (31%), Positives = 42/101 (41%)
Frame = +1
Query: 274 VGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQ 453
V +GHVDHGKT+L I N E ++ GIT ++ +
Sbjct: 94 VTVMGHVDHGKTSLLDYIRNA----------------NVIEGESGGITQHIGAYSVKVGD 137
Query: 454 RHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 576
+ D PGH + G D I+VVAA D VMPQ
Sbjct: 138 QKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQ 178
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/94 (32%), Positives = 44/94 (46%)
Frame = +1
Query: 280 TIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQRH 459
TIGHV HGK+T + K LS + + K E R ITI + + +
Sbjct: 27 TIGHVAHGKST----VVKALSGVQTVRFKN---------ELERNITIKLGYANAKV---- 69
Query: 460 YGHTDCPGHADYIKNMITGTAQMDGAILVVAATD 561
DCPGH + M+ G A MD A+L++A +
Sbjct: 70 ----DCPGHDILMATMLNGAAVMDAALLLIAGNE 99
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 42.7 bits (96), Expect = 2e-04
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 18/120 (15%)
Frame = +1
Query: 271 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHV----- 435
N+ I HVDHGK+TLT ++ + A+ D +E+ R ITI +
Sbjct: 20 NMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKSTAISLYYE 79
Query: 436 ------EYQTEQRH-------YGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 576
EY T+ + D PGH D+ + DGA++VV GV Q
Sbjct: 80 LPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ 139
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 37.9 bits (84), Expect = 0.006
Identities = 39/110 (35%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Frame = +1
Query: 253 RTKPHCNVGTI-GHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINV- 426
R P V TI GHVDHGKTTL A+ N + G +A GIT ++
Sbjct: 23 RLMPRPPVVTIMGHVDHGKTTLLDALR------NSSVAAG----------EAGGITQHIG 66
Query: 427 AHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 576
A + D PGHA + G D +LVVAA DGV Q
Sbjct: 67 AFLVKLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQ 116
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 271 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINV-AHVEYQT 447
N + HVDHGK+TL + +V ++ + +D E+ RGIT+ HV++
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNKQV-LDKLQVERERGITVKAQGHVDFSY 2001
Query: 448 E 450
E
Sbjct: 2002 E 2002
>SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14)
Length = 239
Score = 34.7 bits (76), Expect = 0.055
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 6/174 (3%)
Frame = +1
Query: 73 LKNLFNMASITFVKSLVSPAVKLVLKQSQCANVRNSTVLSGLTPLSIILKRHYAEKQIFE 252
L F+ A + +S+++P ++ C + PL++ Y ++ +
Sbjct: 72 LSGQFSKAFVALFQSVMTPTLR-------CTPLITCLSSDARLPLAMSHTGKYTDQPLMT 124
Query: 253 RTK--PHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPE-EKARGITIN 423
PH N G +G V +G +A K+L YA NAP + G+
Sbjct: 125 PASNDPHWNCGEMGDVQNGVCAQGSA-KKIL----------YAWAGNAPSLDLPEGVAFK 173
Query: 424 VAH---VEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 576
V V+Y Q HYGH D + + ++TG + +G +++ D PQ
Sbjct: 174 VGQDSDVKYLVLQVHYGHVD-----KFFRTVMTGYRERNGDRVLIGKGDPQKPQ 222
>SB_37376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 31.5 bits (68), Expect = 0.51
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +1
Query: 67 LVLKNLFNMASITFVKS-LVSPAVKLVLKQSQCANVRNSTVLSGLTPLSIILKRH----Y 231
L+L LFN +++ L A + K+ C N S + LT L+ KRH Y
Sbjct: 172 LLLAGLFNKGALSSATMPLAISAFRDQFKEMSCINKLTSVCVIALTALTTTRKRHSDNEY 231
Query: 232 AEKQIFERTK 261
AEK++ R K
Sbjct: 232 AEKRVEYRYK 241
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 441 PNRTEALWTH*LPRSC*LH*EHDYRHSTNGWCHISSSCNRWCNAT 575
P +T+A W H P + H + N WCH + + WC+ T
Sbjct: 264 PTKTQANWYH--PTKTQANLNHPIKTQAN-WCHPNKTQANWCHPT 305
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 253 RTKPHCNVGTIGHVDHGKTTLT 318
+ K H N+ IGHVD GK+T T
Sbjct: 3 KEKIHINIVVIGHVDSGKSTTT 24
>SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25)
Length = 506
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +1
Query: 481 GHADYIKNMITGTAQMDGAILVVAAT 558
GHADYI +MIT TA +G++ V +A+
Sbjct: 434 GHADYISHMITTTAD-NGSVTVWSAS 458
>SB_25250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 328 TKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 450
T +L D + +K Y +D++ EKA GI ++ +H E T+
Sbjct: 97 TYILLDDSHGEKTAYILLDDSHAEKATGILLDDSHAEKATD 137
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 432 C*IPNRTEALWTH*LPRSC*LH*EHDYRHSTNGWCHISSSCNRWCNAT 575
C P++T A W H P + H + N WCH + + WC+ T
Sbjct: 406 CGHPSKTHANWCH--PTKTQANWCHPTKTQAN-WCHPTKTQANWCHPT 450
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 441 PNRTEALWTH*LPRSC*LH*EHDYRHSTNGWCHISSSCNRWCNAT 575
P +T+A W H P + H + +N WCH + + WC T
Sbjct: 29 PYKTQANWCH--PTKTQANLNHPIKIQSN-WCHPNKTQANWCYPT 70
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 441 PNRTEALWTH*LPRSC*LH*EHDYRHSTNGWCHISSSCNRWCNAT 575
P++T++ W H P + H + N WCH +++ WC T
Sbjct: 279 PSKTQSNWNH--PSKTQANCGHPTKTHAN-WCHPTTTHANWCYPT 320
>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
Length = 284
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 415 TINVAHVEYQTEQRHYGHTDCPGHADY 495
T+ H Y T H HT CP H Y
Sbjct: 148 TLRTTHTTYATHTVHTRHTACPTHYTY 174
>SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5)
Length = 293
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 474 LPRSC*LH*EHDYRHSTNGWCHISSSCN 557
L RSC H D H + GWC ++ SCN
Sbjct: 37 LARSCNGH--TDLHHCSIGWCILARSCN 62
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 472 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQ 576
D PGH + G++ D AILVV G+ PQ
Sbjct: 684 DTPGHESFSNLRSRGSSLCDMAILVVDIMHGLEPQ 718
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,948,588
Number of Sequences: 59808
Number of extensions: 364162
Number of successful extensions: 1006
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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