Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f19
(500 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93387-4|CAI91177.1| 333|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z93387-3|CAB07652.1| 352|Caenorhabditis elegans Hypothetical pr... 28 3.3
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass... 28 4.4
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 28 4.4
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass... 28 4.4
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 28 4.4
U53335-2|AAU87823.1| 190|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z69884-10|CAA93753.1| 400|Caenorhabditis elegans Hypothetical p... 27 7.6
Z69883-7|CAA93745.1| 400|Caenorhabditis elegans Hypothetical pr... 27 7.6
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr... 27 7.6
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr... 27 7.6
>Z93387-4|CAI91177.1| 333|Caenorhabditis elegans Hypothetical
protein T02E9.2b protein.
Length = 333
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 105 RRRPSHRAHATPATCWGGRVARGYPG 28
++ P+ H PA C GG + +GY G
Sbjct: 30 QQAPACAPHPAPAPCSGGNIVQGYVG 55
>Z93387-3|CAB07652.1| 352|Caenorhabditis elegans Hypothetical
protein T02E9.2a protein.
Length = 352
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 105 RRRPSHRAHATPATCWGGRVARGYPG 28
++ P+ H PA C GG + +GY G
Sbjct: 30 QQAPACAPHPAPAPCSGGNIVQGYVG 55
>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform d protein.
Length = 1379
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/59 (35%), Positives = 25/59 (42%)
Frame = -3
Query: 189 YARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTVPLR 13
Y RLS E+S V S P+ P V GR+ +C R R PG PLR
Sbjct: 234 YKRLSMWETSLNVESDVEPLHTPPLVVGRKLDYIDKEGNNPSCCRERGTR-KPGFRPLR 291
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform b protein.
Length = 4034
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/59 (35%), Positives = 25/59 (42%)
Frame = -3
Query: 189 YARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTVPLR 13
Y RLS E+S V S P+ P V GR+ +C R R PG PLR
Sbjct: 234 YKRLSMWETSLNVESDVEPLHTPPLVVGRKLDYIDKEGNNPSCCRERGTR-KPGFRPLR 291
>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform a protein.
Length = 1633
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/59 (35%), Positives = 25/59 (42%)
Frame = -3
Query: 189 YARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTVPLR 13
Y RLS E+S V S P+ P V GR+ +C R R PG PLR
Sbjct: 234 YKRLSMWETSLNVESDVEPLHTPPLVVGRKLDYIDKEGNNPSCCRERGTR-KPGFRPLR 291
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform c protein.
Length = 7548
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/59 (35%), Positives = 25/59 (42%)
Frame = -3
Query: 189 YARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTVPLR 13
Y RLS E+S V S P+ P V GR+ +C R R PG PLR
Sbjct: 234 YKRLSMWETSLNVESDVEPLHTPPLVVGRKLDYIDKEGNNPSCCRERGTR-KPGFRPLR 291
>U53335-2|AAU87823.1| 190|Caenorhabditis elegans Hypothetical
protein C55C3.7 protein.
Length = 190
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 1 GTRAAQRDCARVPACNATAPT 63
GT RDC P CN T P+
Sbjct: 7 GTLFQTRDCISAPVCNCTGPS 27
>Z69884-10|CAA93753.1| 400|Caenorhabditis elegans Hypothetical
protein C27C12.3 protein.
Length = 400
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = -3
Query: 261 LTFIYVNSSFTT*SRVQNKVPHYGYARLSGRE----SSRRVTSVARPVQRPSDVAGRRRP 94
L ++ S + +N + +LSG+ S+ RV VAR SD++ +
Sbjct: 180 LNKLFAGCSIEEIASAENNMSFGNSRKLSGKSVNVRSNHRVLEVARETMNSSDISPNKNT 239
Query: 93 SH-RAHATPATCWGGRVARGYPGTVPLR 13
S +P+T W + P ++ +R
Sbjct: 240 SSVLLDGSPSTIWPPSDSLELPRSIQMR 267
>Z69883-7|CAA93745.1| 400|Caenorhabditis elegans Hypothetical
protein C27C12.3 protein.
Length = 400
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = -3
Query: 261 LTFIYVNSSFTT*SRVQNKVPHYGYARLSGRE----SSRRVTSVARPVQRPSDVAGRRRP 94
L ++ S + +N + +LSG+ S+ RV VAR SD++ +
Sbjct: 180 LNKLFAGCSIEEIASAENNMSFGNSRKLSGKSVNVRSNHRVLEVARETMNSSDISPNKNT 239
Query: 93 SH-RAHATPATCWGGRVARGYPGTVPLR 13
S +P+T W + P ++ +R
Sbjct: 240 SSVLLDGSPSTIWPPSDSLELPRSIQMR 267
>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
protein ZK688.5b protein.
Length = 1595
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -3
Query: 285 HQVILLVVLTFIYVNSSFTT*SRVQNKVPHYGYARLSGRESSRRVTSVARPVQRPSDVAG 106
HQ+ + LT ++ SF T S Q +P Y + + + VT + P + SDV G
Sbjct: 456 HQISHMTHLT-ADLDVSFITPSFPQRILPQYAFQSSDEQPLTIPVTHIFEPPRMLSDVGG 514
Query: 105 R 103
R
Sbjct: 515 R 515
>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
protein ZK688.5a protein.
Length = 1620
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -3
Query: 285 HQVILLVVLTFIYVNSSFTT*SRVQNKVPHYGYARLSGRESSRRVTSVARPVQRPSDVAG 106
HQ+ + LT ++ SF T S Q +P Y + + + VT + P + SDV G
Sbjct: 456 HQISHMTHLT-ADLDVSFITPSFPQRILPQYAFQSSDEQPLTIPVTHIFEPPRMLSDVGG 514
Query: 105 R 103
R
Sbjct: 515 R 515
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,938,342
Number of Sequences: 27780
Number of extensions: 203149
Number of successful extensions: 506
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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