BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11f17 (564 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont... 143 6e-35 At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ... 141 3e-34 At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont... 134 3e-32 At1g01010.1 68414.m00001 no apical meristem (NAM) family protein... 28 3.7 At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar... 28 5.0 At5g36210.1 68418.m04365 expressed protein 27 6.5 At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar... 27 8.7 >At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) contains similarity to 40S ribosomal protein S10 Length = 180 Score = 143 bits (347), Expect = 6e-35 Identities = 78/163 (47%), Positives = 101/163 (61%), Gaps = 6/163 (3%) Frame = +3 Query: 42 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 221 M++ + NR I +YLFKEGV+ AKKD++ P+H +E +PNLQVIK MQS KS+ YV+E F Sbjct: 1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60 Query: 222 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVG-RPDAPARS---- 386 AW H+YW+LTNEGI++LR +L+LP EIVPATLK+ + G G RP P R Sbjct: 61 AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGER 120 Query: 387 -AEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGR 512 DR YR P + G + KA P F+GG G R Sbjct: 121 RFGDRDGYRGGPKSGG--EYGDKAG-APADYQPGFRGGAGGAR 160 >At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ribosomal protein S10 - Lumbricus rubellus, PID:e1329701 Length = 177 Score = 141 bits (341), Expect = 3e-34 Identities = 77/158 (48%), Positives = 100/158 (63%), Gaps = 3/158 (1%) Frame = +3 Query: 42 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 221 M++ + NR I +YLFKEGV AKKD++ PKH ++ +PNLQVIK MQS KS+ YV+E F Sbjct: 1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59 Query: 222 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSAED 395 AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S + GP G R P RS D Sbjct: 60 AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGD 119 Query: 396 RSAY-RRTPAAPGVAPHDKKADVGPGSADLEFKGGYGR 506 R + R G D+K P F+GG GR Sbjct: 120 RPRFGDRDGYRGGPRGGDEKGG-APADFQPSFQGGGGR 156 >At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) contains similarity to 40S ribosomal protein S10 Length = 179 Score = 134 bits (325), Expect = 3e-32 Identities = 77/167 (46%), Positives = 100/167 (59%), Gaps = 11/167 (6%) Frame = +3 Query: 42 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 221 M++ + NR I +YLFKEGV AKKD++ KH ++ +PNLQVIK MQS KS+ YV+E F Sbjct: 1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59 Query: 222 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSA-- 389 AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S + GP G R P Sbjct: 60 AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGD 119 Query: 390 ----EDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKG---GYGRG 509 DR YR P A G +K P F+G G+GRG Sbjct: 120 RPRFGDRDGYRAGPRAGGEFGGEKGG--APADYQPSFQGSGRGFGRG 164 >At1g01010.1 68414.m00001 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB: AAD17313 GI:4325282 from [Arabidopsis thaliana] Length = 429 Score = 28.3 bits (60), Expect = 3.7 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = +3 Query: 129 PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 218 P HT ++ IP+L +I+ + + K++ K+Q Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362 >At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to receptor-like protein kinase (Ipomoea nil) (U77888) Length = 1029 Score = 27.9 bits (59), Expect = 5.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 480 LEFKGGYGRGRPAS*FKQ*KNLK 548 L+F+GGY G S FK KNLK Sbjct: 178 LDFRGGYFEGSVPSSFKNLKNLK 200 >At5g36210.1 68418.m04365 expressed protein Length = 676 Score = 27.5 bits (58), Expect = 6.5 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +3 Query: 39 KMLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKH 137 K++ P Q+R IYE L K+G+ VA +Y +H Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634 >At5g34930.1 68418.m04119 arogenate dehydrogenase identical to arogenate dehydrogenase GI:16903098 from [Arabidopsis thaliana]; contains Pfam profile: PF02153: prephenate dehydrogenase Length = 640 Score = 27.1 bits (57), Expect = 8.7 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -2 Query: 134 LRCMIVFFGHHDSLFKEVLINSNTVLFGH 48 LR I+ FG++ E LI+ +LF H Sbjct: 53 LRIAIIGFGNYGQFLAETLISQGHILFAH 81 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,147,609 Number of Sequences: 28952 Number of extensions: 216769 Number of successful extensions: 599 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 581 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 597 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1082538160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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