Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f14
(621 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 59 3e-09
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 53 1e-07
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 52 4e-07
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 49 3e-06
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 48 4e-06
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 44 1e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 42 2e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 42 2e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 42 2e-04
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 42 3e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 42 4e-04
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 40 0.001
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 40 0.001
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 40 0.002
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 40 0.002
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 40 0.002
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 40 0.002
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 40 0.002
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 40 0.002
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 39 0.002
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 39 0.003
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 39 0.003
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 38 0.004
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 38 0.004
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 38 0.005
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 38 0.007
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 37 0.009
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 37 0.009
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 37 0.012
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 37 0.012
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 36 0.016
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 36 0.022
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 36 0.022
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 36 0.029
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 35 0.050
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 35 0.050
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 35 0.050
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 34 0.066
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 34 0.087
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 34 0.087
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 34 0.087
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 34 0.087
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 33 0.12
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 33 0.12
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 33 0.12
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 33 0.12
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 33 0.12
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 33 0.12
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 33 0.15
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 33 0.15
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 33 0.15
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 33 0.15
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 33 0.15
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 33 0.15
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 33 0.20
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 33 0.20
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 33 0.20
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 33 0.20
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 33 0.20
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.20
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.20
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.20
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 33 0.20
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 32 0.27
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 32 0.27
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 32 0.27
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 32 0.27
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 32 0.27
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 32 0.27
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 32 0.27
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 32 0.27
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 32 0.35
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 32 0.35
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 31 0.47
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 31 0.47
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 31 0.47
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 31 0.62
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 31 0.62
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 31 0.62
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 0.62
At1g21312.1 68414.m02663 RNA recognition motif (RRM)-containing ... 31 0.62
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 31 0.81
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 31 0.81
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.81
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.81
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 30 1.1
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 30 1.4
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 30 1.4
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 29 1.9
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 29 2.5
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 29 2.5
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 29 2.5
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 29 3.3
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 29 3.3
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 3.3
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 29 3.3
At1g52030.2 68414.m05870 myrosinase-binding protein, putative (F... 29 3.3
At1g52030.1 68414.m05869 myrosinase-binding protein, putative (F... 29 3.3
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 29 3.3
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 28 4.3
At1g76940.1 68414.m08957 RNA recognition motif (RRM)-containing ... 28 4.3
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 28 4.3
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 28 5.7
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 27 7.6
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +1
Query: 103 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLE 279
P EP ++ YVGNLP + G + ++F + + R+V D+ET + +GF +V ++
Sbjct: 237 PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 296
Query: 280 DLMKAIDLNGIINVDGNILKIDVAEEK 360
+L +AI N++G ++++VAEE+
Sbjct: 297 ELNEAISALDGQNLEGRAIRVNVAEER 323
Score = 35.9 bits (79), Expect = 0.022
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 103 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLE 279
P PSE K +VGNL + + +F +++ ++ ++ETD+ +GF +V ++
Sbjct: 144 PEPSEEA-KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVD 202
Query: 280 DLMKAIDLNGIINVDGNILKIDVA 351
+ A++ +++G +L ++ A
Sbjct: 203 EAETAVEKFNRYDLNGRLLTVNKA 226
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +1
Query: 103 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLE 279
P + ++ YVGNLP + G + R+F + + + R+V D+ET + +GF +V+
Sbjct: 200 PRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNEN 259
Query: 280 DLMKAIDLNGIINVDGNILKIDVAEEK 360
++ AI N++G +K++VAEE+
Sbjct: 260 EVNVAIAALDGQNLEGRAIKVNVAEER 286
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +1
Query: 115 EPPYKA--YVGNLPSGIIQGDINRIFPDLSIKNV-RLVMDKETDKFKGFCYVEFEYLEDL 285
EPP +A +VGNLP + + +F + ++ +++TD+ +GF +V +E+
Sbjct: 108 EPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 286 MKAIDLNGIINVDGNILKIDVA 351
KA++ V+G L ++ A
Sbjct: 168 EKAVEKFNSFEVNGRRLTVNRA 189
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
+ YVGNL + + D+ ++F S++ V++ D ET KGF +V+F LED A++L
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNL 344
Query: 304 NGIINVDGNILKIDVAEEK 360
NG + + G +K+ ++
Sbjct: 345 NGQLEIAGRAIKVSAVTDQ 363
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 199 IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 309
+++VR++MD+ + + +G YVEF + AI L+G
Sbjct: 208 VRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSG 244
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
+ YVGNLP I ++++IF + ++ +V++V DK TD+ +GF +V +E+ +A+ +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 304 NGIINVDGNILKIDVAEEKR 363
+ G +K++ E R
Sbjct: 177 FNSSQIGGRTVKVNFPEVPR 196
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 115 EPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 291
+ P+K Y GNL + + F D + +++ ++ T + +GF ++ FE E++
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 292 AIDLNGIINVDGNILKIDVAEEK 360
A+ + V+G L++++A E+
Sbjct: 276 ALATMNGVEVEGRALRLNLASER 298
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID-LN 306
YVG +P + +GD+ +F I +V L+ DK T K KGF ++ +E + A+D LN
Sbjct: 39 YVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLN 98
Query: 307 GIINVDGNILKID 345
G + V G +K+D
Sbjct: 99 GAL-VLGRTIKVD 110
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 306
+ Y+GNL + DI ++F D I +VRL +KET +FKG+ +V+F+ + A+ L+
Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLD 322
Query: 307 GIINVDGNILKIDVAEEKR 363
+ + G +KI A + R
Sbjct: 323 QQV-ICGRPVKICCALKDR 340
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIF-PDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAI-DLN 306
+V L + + ++F P IK RL+ D ET + KGF ++ F+ +D KA+ L+
Sbjct: 10 FVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLD 69
Query: 307 GIINVDGNILKIDVAE 354
G I VDG ++ ++VA+
Sbjct: 70 GKI-VDGRLIFVEVAK 84
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID- 300
+ YVGNL G+ + +F + + R++ D+++ + KGF +V +++ KAI+
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 301 LNGIINVDGNILKIDVAEEK 360
LNG ++DG +++ AE +
Sbjct: 310 LNG-ADLDGRQIRVSEAEAR 328
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID- 300
+ YVGNL G+ + +F + + R++ D+++ + KGF +V +++ KAI+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 301 LNGIINVDGNILKIDVAEEK 360
LNG ++DG +++ AE +
Sbjct: 318 LNG-ADLDGRQIRVSEAEAR 336
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 309
+ GNL I + DI F + + +VRL + FKG+ ++EF E+ KA+++NG
Sbjct: 387 FAGNLSYQIARSDIENFFKEAGEVVDVRL-SSFDDGSFKGYGHIEFASPEEAQKALEMNG 445
Query: 310 IINVDGNILKIDVAEEK 360
+ + G +++D+A E+
Sbjct: 446 KLLL-GRDVRLDLANER 461
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 309
+ NL I + D+ F + + +VR +++ F+GF +VEF E+ KA++ +G
Sbjct: 300 FAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHG 359
Query: 310 IINVDGNILKIDVAEEK 360
+ G +++D+A+E+
Sbjct: 360 -RPLLGREIRLDIAQER 375
Score = 35.9 bits (79), Expect = 0.022
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K + +L I+ + F IKNV + +D++T KG Y+EF E KA++L
Sbjct: 406 KGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS--EGKEKALEL 463
Query: 304 NGIINVDGNILKID 345
NG G L +D
Sbjct: 464 NGSDMGGGFYLVVD 477
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID-LNG 309
YV NL + ++N++F + + ++M K KGF +V FE +D +A+D LNG
Sbjct: 227 YVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 286
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVM-DKETDKFKGFCYVEFEYLEDLMKAID 300
K +VGNLP+ I + + F I+NV L+ E +K GF ++ + + MKA++
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 301 LNGIINVDGNILKIDVAEEKR 363
+G + G IL + + + KR
Sbjct: 226 FDG-VEFHGRILTVKLDDGKR 245
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
+ YVGNL G+ + +F + + R++ D+++ + KGF +V ++ +++ AI
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 304 NGIINVDGNILKIDVAEEK 360
++DG +++ AE +
Sbjct: 265 LDGADLDGRQIRVSEAEAR 283
Score = 35.9 bits (79), Expect = 0.022
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K +VGNLP + + ++F +++ V ++ DK T + +GF +V + ++ A
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 304 NGIINVDGNILKID 345
+DG L+++
Sbjct: 152 FNGYELDGRPLRVN 165
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 136 VGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGI 312
V LP I + F ++ ++ LV +K +D+ +GF +V+F ED+ +AI+L
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83
Query: 313 INVDGNILKIDVAEEK 360
V G + + A +
Sbjct: 84 STVGGRRITVKQAAHR 99
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/85 (25%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +1
Query: 112 SEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLM 288
SE Y+ +VG L D+ R F + + +++ D+E+ + +GF +V F+ + +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 289 KAI-DLNGIINVDGNILKIDVAEEK 360
AI ++NG +DG ++ ++ A+ +
Sbjct: 62 DAIEEMNG-KELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/85 (25%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +1
Query: 112 SEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLM 288
SE Y+ +VG L D+ R F + + +++ D+E+ + +GF +V F+ + +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 289 KAI-DLNGIINVDGNILKIDVAEEK 360
AI ++NG +DG ++ ++ A+ +
Sbjct: 62 DAIEEMNG-KELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/85 (25%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +1
Query: 112 SEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLM 288
SE Y+ +VG L D+ R F + + +++ D+E+ + +GF +V F+ + +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 289 KAI-DLNGIINVDGNILKIDVAEEK 360
AI ++NG +DG ++ ++ A+ +
Sbjct: 62 DAIEEMNG-KELDGRVITVNEAQSR 85
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 103 PLPSEPPYKA-YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYL 276
P + PYK +V L + I R F IK V LV D+ T+K KG+ ++E+ +
Sbjct: 130 PNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHT 189
Query: 277 EDLMKAIDLNGIINVDGNILKIDV 348
D+ A +DG + +DV
Sbjct: 190 RDMKAAYKQADGQKIDGRRVLVDV 213
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +1
Query: 112 SEPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLM 288
S P K YV L + + F ++ ++ +VMDK ++ KGF ++ +E E+ M
Sbjct: 73 SGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAM 132
Query: 289 KAID-LNGIINVDGNILKIDVAEEK 360
KAI ++G +DG ++ ++ A+ +
Sbjct: 133 KAIQGMHGKF-LDGRVIFVEEAKTR 156
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 309
+VGN+P + + I ++ + + RLV D+ET K KG+ + E++ E + A
Sbjct: 12 FVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQ 71
Query: 310 IINVDGNILKIDVAEEKR 363
++G L++D AE +
Sbjct: 72 SYEINGRQLRVDFAENDK 89
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 211 RLVMDKETDKFKGFCYVEFEYLEDLMKAID-LNGIINVDGNILKIDVAEE 357
RL+ D++T + KGF ++ FE +D KA+ LNG I V+G ++ ++ A+E
Sbjct: 96 RLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKI-VNGRLIFVETAKE 144
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 309
YVGNLP I + +I IF I ++ L K + +C+VEFE+ D AI
Sbjct: 10 YVGNLPGDIREHEIEDIFYKYGRIVDIEL---KVPPRPPCYCFVEFEHSRDAEDAIKGRD 66
Query: 310 IINVDGNILKIDVAEEKR 363
N+DG L++++A R
Sbjct: 67 GYNLDGCRLRVELAHGGR 84
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K +V NLP + DI+ +F ++ NV ++ K+ K +GF +V E+ AID
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDK 154
Query: 304 NGIINVDGNILKIDVA 351
V G I+ + A
Sbjct: 155 FDTFQVSGRIISVSFA 170
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Frame = +1
Query: 106 LPSEPPY--KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYL 276
L S PP+ + ++G LP + + D+ + ++ I VRL+ D+++ KG+ +V F+
Sbjct: 108 LLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTK 167
Query: 277 EDLMKAIDLNGIINVDGNILKIDVAEEK 360
+ KAI+ G ++ ++E K
Sbjct: 168 DVAQKAIEELHSKEFKGKTIRCSLSETK 195
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +1
Query: 112 SEPPYKAYVGNLPSGIIQGDINRIFPDL--SIKNVRLVMD-KETDKFKGFCYVEF--EYL 276
SE + ++GN+P + + ++ D+ ++N+ L+ D T + +GF +V +
Sbjct: 192 SETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNAC 251
Query: 277 EDLMKAIDLNGIINVDGNILKIDVAEEK 360
D + ++ ++GN + A+ K
Sbjct: 252 ADYSRQKMIDSNFKLEGNAPTVTWADPK 279
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 124 YKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 300
Y+ +VG L + I R F + + + ++++D+ET + KGF +V F+ + + AID
Sbjct: 44 YRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAID 103
Query: 301 -LNG 309
+NG
Sbjct: 104 RMNG 107
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/84 (22%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +1
Query: 112 SEPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLM 288
SE + Y+GN+P + + ++ + +++ V+++ DK + + + F + + +ED
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 289 KAID-LNGIINVDGNILKIDVAEE 357
++ LNG V+G +K+++ E+
Sbjct: 132 AVVEKLNGN-TVEGREIKVNITEK 154
Score = 35.5 bits (78), Expect = 0.029
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +1
Query: 115 EPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 291
+ PYK YVGNL + + + +F + + + ++ T K GF +V F ED+
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 292 AI-DLNGIINVDGNILKIDVA 351
AI LN + ++G ++++ A
Sbjct: 234 AIVALNNSL-LEGQKIRVNKA 253
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +1
Query: 199 IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG--IINVDGNILKIDVAE 354
IK++RLV DK T +GF +V F +ED KA++ + +G IL++ A+
Sbjct: 484 IKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +1
Query: 118 PPY--KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLM 288
PP+ + Y+G +P+ +GD+ + + VR++ +K++ KG+ +V F +
Sbjct: 88 PPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAA 147
Query: 289 KAIDLNGIINVDGNILKIDVAEEK 360
+AID + G +K + K
Sbjct: 148 EAIDTLNNTDFRGKRIKCSTTQAK 171
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 37.1 bits (82), Expect = 0.009
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +1
Query: 109 PSEPPYKAYVGNLPSGIIQGDINRIFPDLSIKN-VRLVMDKETDKFKGFCYVEFEYLEDL 285
P+ K Y GNLP + + +I D + V ++ +++T + +GF +V +ED
Sbjct: 80 PAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDC 139
Query: 286 MKAID-LNGIINVDGNILKIDVAEEKR 363
ID L+G + G LK++ A++ +
Sbjct: 140 NIIIDNLDGTEYL-GRALKVNFADKPK 165
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 36.7 bits (81), Expect = 0.012
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAI-D 300
K ++G L + ++ F + ++VMD+ +D+ KGF +V F ++ KA+ +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 301 LNGIINVDGNILKIDVAEEKRN 366
NG ++G + +D A+ K++
Sbjct: 95 FNG-QQLNGRTIFVDYAKAKQS 115
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 36.7 bits (81), Expect = 0.012
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K V NLP + + R F I V+L+ D+ + KG+ +++F +D AI+
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 304 NGIINVDGNILKIDVAE 354
+G ++ ID+A+
Sbjct: 101 MDRRMYNGRMIYIDIAK 117
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/79 (22%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K +VG + + + F + + ++++D+ET + +GF +V F E+ A+ L
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 304 NGIINVDGNILKIDVAEEK 360
+G ++ G ++++ A E+
Sbjct: 95 DG-QDLHGRRIRVNYATER 112
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K ++G + + + + F + + R+++D+ET + +GF +V F E AI
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 304 NGIINVDGNILKIDVAEEK 360
++ G ++K++ A ++
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 35.9 bits (79), Expect = 0.022
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLSIKNVRLV-----MDKETDKFKGFCYVEFEYLEDLMKAI 297
Y+GN+ + +R+ D+ I+ R++ DKETDK KGF + E+E E A+
Sbjct: 10 YIGNVDERVS----DRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAV 65
Query: 298 DL-NGIINVDGNILKIDVAEEKR 363
L +G++++ LK ++ + +
Sbjct: 66 KLFSGLVSLYNRTLKFAISGQDK 88
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 35.5 bits (78), Expect = 0.029
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +1
Query: 109 PSEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDL 285
P + +P + D+ F +++VRL+MD+ + + KG Y+EF + +
Sbjct: 163 PERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSV 222
Query: 286 MKAIDLNGIINVDGNILKIDVAEEKRN 366
AI L+G + + G + + +E ++N
Sbjct: 223 PMAIALSGQLFL-GQPVMVKPSEAEKN 248
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 34.7 bits (76), Expect = 0.050
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Frame = +1
Query: 118 PPYKAYVGNLPSGIIQGDINRIFPDL--SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 291
P + +VG+L + ++ F ++ S+K ++V+D+ T + KG+ +V F + M+
Sbjct: 152 PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMR 211
Query: 292 AI-DLNG 309
A+ ++NG
Sbjct: 212 AMTEMNG 218
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.7 bits (76), Expect = 0.050
Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 106 LPSEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLED 282
+ +P Y+ ++G L + F + ++V+DK + + +GF ++ F+ +
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 283 LMKAIDLNGIINVDGNILKIDVAE 354
+ +AI +++DG + +D A+
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQ 84
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 34.7 bits (76), Expect = 0.050
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +1
Query: 118 PPYKAYVGNLPSGIIQGDINRIFPDL--SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 291
P +VG+L + ++ F D S+K+ ++V+D T + KG+ +V F + +
Sbjct: 200 PDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSR 259
Query: 292 AI-DLNGIINVDGNILKIDVAEEKR 363
A+ ++NG +++ +A KR
Sbjct: 260 ALTEMNGAY-CSNRQMRVGIATPKR 283
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 34.3 bits (75), Expect = 0.066
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +1
Query: 112 SEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLM 288
SE Y+ +VG L D+ R F + + +++ D+E+ + +GF +V F+ + +
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 289 KAI-DLNG 309
AI ++NG
Sbjct: 62 DAIEEMNG 69
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 33.9 bits (74), Expect = 0.087
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 306
YVGN+ ++ F ++ V ++MDK KGF YVEF +E + +A+ LN
Sbjct: 92 YVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQP-KGFAYVEFVEVEAVQEALQLN 149
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 33.9 bits (74), Expect = 0.087
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 306
YVGN+ ++ F ++ V ++MDK KGF YVEF +E + +A+ LN
Sbjct: 92 YVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQP-KGFAYVEFVEVEAVQEALQLN 149
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 33.9 bits (74), Expect = 0.087
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 199 IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKA-IDLNGIINVDGNILKIDVAEEKRN 366
+ V ++MDK + KGF YV F E+ KA ++LN + VDG ++ +D + ++
Sbjct: 47 VLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQL-VDGRVVILDTTKAAKH 102
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 33.9 bits (74), Expect = 0.087
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 169 DINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID-LNG 309
DI F D IKN+ L +D+ + KG+ +E+E E+ AI +NG
Sbjct: 110 DITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +1
Query: 112 SEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLM 288
+ P K ++G L + + + F + VR+ DK + + +GF +V+F D +
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 289 KAIDLNGIINVDGNILKIDVAEEK 360
A D + G L+I A E+
Sbjct: 97 SAKDAMDGKGLLGRPLRISFALER 120
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K +VG LPS + + D F + +V ++ D T + +GF ++ ++ E+ ++ + L
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYD-SEEAVEKVLL 167
Query: 304 NGIINVDGNILKIDVAEEK 360
++G ++++ A K
Sbjct: 168 KTFHELNGKMVEVKRAVPK 186
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K +VG LPS + + D F + +V ++ D T + +GF ++ ++ E+ ++ + L
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYD-SEEAVEKVLL 167
Query: 304 NGIINVDGNILKIDVAEEK 360
++G ++++ A K
Sbjct: 168 KTFHELNGKMVEVKRAVPK 186
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 33.5 bits (73), Expect = 0.12
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +1
Query: 109 PSEPPYKA-YVGNLPSGIIQGDINRIFPDLS--IKNVRLVMDKETDKFKGFCYVEFEYLE 279
P+E P Y+G + + ++ D + +K+ D T K KGF + EFE E
Sbjct: 198 PAEKPQTTIYIGKIAT--VENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAE 255
Query: 280 DLMKAIDLNGIINVDGNILKIDV 348
+++AI L +DG L ++V
Sbjct: 256 GILRAIRLLTQRTIDGQELLVNV 278
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +1
Query: 118 PPYKAYVGNLPSGIIQGDINRIFPDL--SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 291
P Y +VG+L + + + F S+K ++V+D+ T + KG+ +V F + ++
Sbjct: 153 PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIR 212
Query: 292 AI-DLNGI 312
A+ ++NG+
Sbjct: 213 AMTEMNGV 220
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +1
Query: 118 PPYKAYVGNLPSGIIQGDINRIFPDL--SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 291
P Y +VG+L + + + F S+K ++V+D+ T + KG+ +V F + ++
Sbjct: 153 PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIR 212
Query: 292 AI-DLNGI 312
A+ ++NG+
Sbjct: 213 AMTEMNGV 220
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 33.1 bits (72), Expect = 0.15
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 127 KAYVGNLP-SGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKA 294
K YVG LP + +G IN I +V +V D+ETD+ +G+ +V F+ E +A
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRA 70
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 33.1 bits (72), Expect = 0.15
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID-LN 306
+V + +G + ++F + + NV+++ ++ T + G+ YV F ED A++ +N
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 307 G 309
G
Sbjct: 140 G 140
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 33.1 bits (72), Expect = 0.15
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDL 285
K +VG LPS I + + F +I +V ++ D T + +GF ++ F+ E +
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESV 176
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K +VG L G + + F + ++ D+ET + +GF +V F + AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 304 NGIINVDGNILKIDVAEEK 360
++G +++++A E+
Sbjct: 96 MDGKELNGRQIRVNLATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K +VG L G + + F + ++ D+ET + +GF +V F + AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 304 NGIINVDGNILKIDVAEEK 360
++G +++++A E+
Sbjct: 96 MDGKELNGRQIRVNLATER 114
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +1
Query: 208 VRLVMDKETDKFKGFCYVEFEYLEDLMKAI-DLNGIINVDGNILKIDVAEEK 360
V+++MDK + + KG+ ++E+ E A+ ++NG I ++G ++ +DVA+ K
Sbjct: 311 VKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKI-INGWMIVVDVAKTK 361
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 32.7 bits (71), Expect = 0.20
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 112 SEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLM 288
S P + NLP D+ F +K++ L + T + +GF +V++ Y ED
Sbjct: 43 SSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAA 102
Query: 289 KAIDLNGIINVDGNILKIDVAEEKR 363
+A+ + G + I AEE R
Sbjct: 103 EAMKRMNHKVIGGREIAIVFAEENR 127
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 32.7 bits (71), Expect = 0.20
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
+ +V NLP + ++ F I V LV+DKET + +G Y+ + E +A++
Sbjct: 262 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 321
Query: 304 NGIINVDGNILKIDVAEEK 360
+ G +L I A+ +
Sbjct: 322 LDNSSFQGRLLHILPAKHR 340
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +1
Query: 118 PPYKAYVGNLPSGIIQGDINRIFPDL--SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 291
P +VG+L + ++ F + S+K ++V+D T + KG+ +V F + K
Sbjct: 197 PDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 256
Query: 292 AI-DLNGI 312
A+ ++NG+
Sbjct: 257 AMTEMNGV 264
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +1
Query: 118 PPYKAYVGNLPSGIIQGDINRIFPDL--SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 291
P +VG+L + ++ F + S+K ++V+D T + KG+ +V F + K
Sbjct: 195 PDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 254
Query: 292 AI-DLNGI 312
A+ ++NG+
Sbjct: 255 AMTEMNGV 262
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +1
Query: 118 PPYKAYVGNLPSGIIQGDINRIFPDL--SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 291
P +VG+L + ++ F + S+K ++V+D T + KG+ +V F + K
Sbjct: 195 PDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 254
Query: 292 AI-DLNGI 312
A+ ++NG+
Sbjct: 255 AMTEMNGV 262
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 32.7 bits (71), Expect = 0.20
Identities = 22/77 (28%), Positives = 37/77 (48%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGI 312
YVGNLP I + ++ +F V + K + G+ +VEF+ D AI
Sbjct: 10 YVGNLPGDIREREVEDLFSKYG--PVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
Query: 313 INVDGNILKIDVAEEKR 363
+ DG+ L++++A R
Sbjct: 68 YDFDGHRLRVELAHGGR 84
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 32.7 bits (71), Expect = 0.20
Identities = 22/77 (28%), Positives = 37/77 (48%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGI 312
YVGNLP I + ++ +F V + K + G+ +VEF+ D AI
Sbjct: 10 YVGNLPGDIREREVEDLFSKYG--PVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
Query: 313 INVDGNILKIDVAEEKR 363
+ DG+ L++++A R
Sbjct: 68 YDFDGHRLRVELAHGGR 84
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 32.7 bits (71), Expect = 0.20
Identities = 22/77 (28%), Positives = 37/77 (48%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGI 312
YVGNLP I + ++ +F V + K + G+ +VEF+ D AI
Sbjct: 10 YVGNLPGDIREREVEDLFSKYG--PVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67
Query: 313 INVDGNILKIDVAEEKR 363
+ DG+ L++++A R
Sbjct: 68 YDFDGHRLRVELAHGGR 84
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 32.7 bits (71), Expect = 0.20
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 115 EPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 291
E +K YVGNLP + F +I + R++ D++T + + F ++ F E+
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 292 AIDLNG 309
A+ NG
Sbjct: 269 ALSFNG 274
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K +VG LPS I + + F +I +V ++ D T + +GF ++ F+ +D + +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD-SDDAVDRVLH 169
Query: 304 NGIINVDGNILKIDVAEEK 360
++G ++++ A K
Sbjct: 170 KTFHELNGKLVEVKRAVPK 188
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K +VG LPS I + + F +I +V ++ D T + +GF ++ F+ +D + +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD-SDDAVDRVLH 169
Query: 304 NGIINVDGNILKIDVAEEK 360
++G ++++ A K
Sbjct: 170 KTFHELNGKLVEVKRAVPK 188
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K +VG LPS I + + F +I +V ++ D T + +GF ++ F+ +D + +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD-SDDAVDRVLH 169
Query: 304 NGIINVDGNILKIDVAEEK 360
++G ++++ A K
Sbjct: 170 KTFHELNGKLVEVKRAVPK 188
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 32.3 bits (70), Expect = 0.27
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +1
Query: 115 EPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLE--DL 285
E P + +VG LP + + + +K LV D+ET KG+ + ++ L D+
Sbjct: 356 EGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDI 415
Query: 286 MKAIDLNGI 312
A LNGI
Sbjct: 416 ACAA-LNGI 423
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 32.3 bits (70), Expect = 0.27
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +1
Query: 115 EPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLE--DL 285
E P + +VG LP + + + +K LV D+ET KG+ + ++ L D+
Sbjct: 356 EGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDI 415
Query: 286 MKAIDLNGI 312
A LNGI
Sbjct: 416 ACAA-LNGI 423
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 32.3 bits (70), Expect = 0.27
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +1
Query: 115 EPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLE--DL 285
E P + +VG LP + + + +K LV D+ET KG+ + ++ L D+
Sbjct: 356 EGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDI 415
Query: 286 MKAIDLNGI 312
A LNGI
Sbjct: 416 ACAA-LNGI 423
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 32.3 bits (70), Expect = 0.27
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGI 312
YVGNLP I + ++ +F V + K + G+ +VEFE D AI
Sbjct: 10 YVGNLPGDIREREVEDLFSKYG--PVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDG 67
Query: 313 INVDGNILKIDVAEEKR 363
+ DG+ L++++A R
Sbjct: 68 YDFDGHHLRVELAHGGR 84
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 32.3 bits (70), Expect = 0.27
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGI 312
YVGNLP I + ++ +F V + K + G+ +VEFE D AI
Sbjct: 10 YVGNLPGDIREREVEDLFSKYG--PVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDG 67
Query: 313 INVDGNILKIDVAEEKR 363
+ DG+ L++++A R
Sbjct: 68 YDFDGHHLRVELAHGGR 84
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 31.9 bits (69), Expect = 0.35
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID-LN 306
Y+GN+ + + +F IK + + +DK T GFC+V F ED A+ ++
Sbjct: 37 YIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYIS 96
Query: 307 GIINVDGNILKID 345
G I +D +++D
Sbjct: 97 GTI-LDDRPIRVD 108
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 118 PPYKAYVGNLPSGIIQGDINRIFPDL--SIKNVRLVMDKETDKFKGFCYVEF-EYLEDLM 288
P + +VG+L + + F + S+K ++V D+ T + KG+ +V F + E +
Sbjct: 171 PEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIR 230
Query: 289 KAIDLNG 309
++NG
Sbjct: 231 AMTEMNG 237
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 31.5 bits (68), Expect = 0.47
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +1
Query: 124 YKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 300
Y V N+ D+ +F + +V + D+ T +GF +V ++Y ++ KA++
Sbjct: 16 YSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVE 75
Query: 301 -LNGIINVDGNILKIDVAE 354
L+G + VDG + + A+
Sbjct: 76 RLDGRV-VDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 31.5 bits (68), Expect = 0.47
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +1
Query: 124 YKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 300
Y V N+ D+ +F + +V + D+ T +GF +V ++Y ++ KA++
Sbjct: 16 YSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVE 75
Query: 301 -LNGIINVDGNILKIDVAE 354
L+G + VDG + + A+
Sbjct: 76 RLDGRV-VDGREITVQFAK 93
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +1
Query: 115 EPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 291
+P +VG L + + + IKN+RLV T +G+ +VE+E +++++
Sbjct: 61 DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLR 120
Query: 292 AIDLNGIINVDGNILKID 345
A + +DG + +D
Sbjct: 121 AYEDAHHSLIDGREIIVD 138
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.1 bits (67), Expect = 0.62
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 306
YVGN+ ++ + F N ++ + + KGF YVEF +E + ++ LN
Sbjct: 106 YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILN 163
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 31.1 bits (67), Expect = 0.62
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +1
Query: 124 YKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 300
Y+ +VG L + F + + +++ D+ET + +GF +V F+ + + AI+
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 301 -LNGIINVDGNILKIDVAEEK 360
+NG ++DG + ++ A+ +
Sbjct: 68 GMNG-QDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 31.1 bits (67), Expect = 0.62
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +1
Query: 124 YKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 300
Y+ +VG L + F + + +++ D+ET + +GF +V F+ + + AI+
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 301 -LNGIINVDGNILKIDVAEEK 360
+NG ++DG + ++ A+ +
Sbjct: 68 GMNG-QDLDGRSITVNEAQSR 87
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 31.1 bits (67), Expect = 0.62
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 115 EPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKG--FCYVEFEYLEDL 285
E P + +VG LP + I + ++ LV D+ET KG FC + + D+
Sbjct: 372 EGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDI 431
Query: 286 MKAIDLNGI 312
A LNGI
Sbjct: 432 ACAA-LNGI 439
>At1g21312.1 68414.m02663 RNA recognition motif (RRM)-containing
protein contains Pfam profile PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain
Length = 210
Score = 31.1 bits (67), Expect = 0.62
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +1
Query: 103 PLPSEPPYKAYVGNLPSGIIQGDINRIF-PDLSIKNVRLVMDKETDKFKG---FCYVEFE 270
PLP + YV LPS + +++ IF P + + VRLV + C+V+FE
Sbjct: 105 PLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFE 164
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 30.7 bits (66), Expect = 0.81
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 306
+VGN+ ++ + F ++ V ++ DK KGF YVEF +E + +A+ LN
Sbjct: 95 FVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQP-KGFAYVEFVEVEAVQEALQLN 152
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 30.7 bits (66), Expect = 0.81
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +1
Query: 118 PPYKAYVGNLPSGIIQGDINRIFPDL--SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 291
P +VG+L + + F S+K ++V+D T + KG+ +V F + +
Sbjct: 211 PDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSR 270
Query: 292 AI-DLNGIINVDGNILKIDVAEEKR 363
A+ ++NG +++ +A KR
Sbjct: 271 AMTEMNGAF-CSSRQMRVGIATPKR 294
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 30.7 bits (66), Expect = 0.81
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKA-IDLN 306
+V +L + + + IF + + +V + MD+ + +G YVEF+ D KA + ++
Sbjct: 101 HVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMD 160
Query: 307 GIINVDGNILK 339
G +DG ++K
Sbjct: 161 G-AQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 30.7 bits (66), Expect = 0.81
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKA-IDLN 306
+V +L + + + IF + + +V + MD+ + +G YVEF+ D KA + ++
Sbjct: 101 HVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMD 160
Query: 307 GIINVDGNILK 339
G +DG ++K
Sbjct: 161 G-AQIDGKVVK 170
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 205 NVRLVMDKETDKFKGFCYVEFEYLEDLMKA-IDLNGIINVDGNILKIDVAEEK 360
+ R++ D+++ + KGF +V + +ED KA ++N +DG ++ +D A +
Sbjct: 62 DARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKF-LDGWVIFVDPARPR 113
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID-LN 306
++ NL + I + F +I + ++ MD T + KG+ +V+FE E AID LN
Sbjct: 139 FIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 307 GIINVDGNI 333
G++ D +
Sbjct: 198 GMLMNDKQV 206
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 309
YVGNLP I + ++ +F I ++ L K + G+ +VEFE D AI
Sbjct: 10 YVGNLPGDIRKCEVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 310 IINVDGNILKIDVAEEKR 363
+ DG L++++A R
Sbjct: 67 GYDFDGCRLRVEIAHGGR 84
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/83 (25%), Positives = 41/83 (49%)
Frame = +1
Query: 118 PPYKAYVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAI 297
P +VGNLP GI++ ++ F L + + + + + +V F + ED AI
Sbjct: 21 PSRHLWVGNLPHGILERELADRF--LRFGELESLAFQPG---RSYAFVNFNHDEDAFAAI 75
Query: 298 DLNGIINVDGNILKIDVAEEKRN 366
+ + GN L+I+ A+ +++
Sbjct: 76 ESLQGFPLSGNPLRIEFAKAEKS 98
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 112 SEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLM 288
+EP +V L + F + + ++V D+ + KGF +V + LED
Sbjct: 52 AEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSA 111
Query: 289 KAIDLNGIINVDGNIL 336
K GI +DG L
Sbjct: 112 K-----GIAGMDGKFL 122
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 29.1 bits (62), Expect = 2.5
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLSI---------KNVRLVMDKETDKFKGFCYVEFEYLEDL 285
YV NLP G + + F + + V L DKETD+ KG V +E
Sbjct: 11 YVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATVTYEDPHAA 70
Query: 286 MKAIDLNGIINVDGNILKIDVAEEK 360
+ A++ + GN + + +AE K
Sbjct: 71 LAAVEWFNNKDFHGNTIGVFMAESK 95
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 118 PPYKAYVGNLPSGIIQGDINRIFP-DLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKA 294
P YV L + + D+ F + + +V LV+D T + +GF ++ + + D +
Sbjct: 73 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 132
Query: 295 IDLNGIINVDGNILKIDVAEEKR 363
I + G ++ ++ A +R
Sbjct: 133 IRSLDHSVLQGRVITVEKARRRR 155
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K ++G L G + F + + ++++D+ET + +GF +V F AI
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 304 NGIINVDGNILKIDVAEEK 360
++G ++++ A ++
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 127 KAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
K ++G L G + F + + ++++D+ET + +GF +V F AI
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 304 NGIINVDGNILKIDVAEEK 360
++G ++++ A ++
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
YVGNL + Q D++R+F L ++ + + KGF +V + ++ AI +
Sbjct: 276 YVGNLSPEVTQLDLHRLFYTL---GAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQM 329
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDL 303
YVGNL + Q D++R+F L ++ + + KGF +V + ++ AI +
Sbjct: 272 YVGNLSPEVTQLDLHRLFYTL---GAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQM 325
>At1g52030.2 68414.m05870 myrosinase-binding protein, putative
(F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
protein-like f-AtMBP [Arabidopsis thaliana]; similar to
myrosinase binding protein GI:1711295 from [Brassica
napus]; contains Pfam PF01419: Jacalin-like lectin
domain; identical to cDNA myrosinase-binding
protein-like protein (MBP1.2) GI:6760446
Length = 642
Score = 28.7 bits (61), Expect = 3.3
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 103 PLPSEPPYKAYVGNLPSGI--IQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYL 276
P+P+ P A P+ + + G+ IF D + +VR V + D G YV+FEY
Sbjct: 319 PVPAPAPTPAPAPAPPNKVEALGGNGGTIFDDGAFDHVRKVYIGQGDS--GVAYVKFEYR 376
Query: 277 EDLMKAIDLNGIINVDG 327
+D + +G + V G
Sbjct: 377 KDGKRETREHGKMTVLG 393
>At1g52030.1 68414.m05869 myrosinase-binding protein, putative
(F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
protein-like f-AtMBP [Arabidopsis thaliana]; similar to
myrosinase binding protein GI:1711295 from [Brassica
napus]; contains Pfam PF01419: Jacalin-like lectin
domain; identical to cDNA myrosinase-binding
protein-like protein (MBP1.2) GI:6760446
Length = 642
Score = 28.7 bits (61), Expect = 3.3
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 103 PLPSEPPYKAYVGNLPSGI--IQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYL 276
P+P+ P A P+ + + G+ IF D + +VR V + D G YV+FEY
Sbjct: 319 PVPAPAPTPAPAPAPPNKVEALGGNGGTIFDDGAFDHVRKVYIGQGDS--GVAYVKFEYR 376
Query: 277 EDLMKAIDLNGIINVDG 327
+D + +G + V G
Sbjct: 377 KDGKRETREHGKMTVLG 393
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 181 IFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 300
++P S + R++ D++T + +GF +V F +D AID
Sbjct: 161 VYPTCS--DARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 109 PSEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDL 285
P K YV N+ + I + F I+ L +DK T + KGF + LE
Sbjct: 222 PENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESA 281
Query: 286 MKAID 300
KA++
Sbjct: 282 KKALE 286
>At1g76940.1 68414.m08957 RNA recognition motif (RRM)-containing
protein contains Pfam PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to RNA-binding
protein with multiple splicing homolog (RBP-MS) (HEart,
RRM Expressed Sequence) (Hermes) (Swiss-Prot:Q9YGI5)
[Xenopus laevis]; similar to RNA-binding protein with
multiple splicing (RBP-MS) (Swiss-Prot:Q93062) [Homo
sapiens]
Length = 233
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 106 LPSEPPYKAYVGNLPSGIIQGDINRIF-PDLSIKNVRLVMDKETDKFKG----FCYVEF 267
LPS+ YV LPS + ++ IF P + + VRLV K++ G C+V+F
Sbjct: 130 LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLV-TKDSKHRNGDPIVLCFVDF 187
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 121 PYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAI 297
P K +VG L + F I + +V+D+E+ +GF +V ++ +E A+
Sbjct: 35 PSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAM 94
Query: 298 DLNGIINVDGNILKIDVAE 354
+DG I+ + A+
Sbjct: 95 QAMQNKELDGRIIGVHPAD 113
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDLSIK-NVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 309
++ N+P ++ F I + ++ +DK T K F +V ++ AID+
Sbjct: 352 FIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMN 411
Query: 310 IINVDGNILKIDVAEEKRN 366
++ G LK+ + + N
Sbjct: 412 GRHLGGKKLKVQLKRDSNN 430
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 133 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID-LN 306
++ NL + I + F +I + ++ MD + KG+ +V+FE E AID LN
Sbjct: 135 FIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 307 GIINVDGNI 333
G++ D +
Sbjct: 194 GMLLNDKQV 202
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,076,223
Number of Sequences: 28952
Number of extensions: 157450
Number of successful extensions: 511
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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