Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f13
         (273 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    29   0.12 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    28   0.27 
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    27   0.63 
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   0.83 
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   1.1  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    25   1.5  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   2.5  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          25   2.5  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   3.4  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    24   4.4  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    24   4.4  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   4.4  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    23   5.9  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   7.8  

>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 29.1 bits (62), Expect = 0.12
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = -3

Query: 220 HPLRLIVDHLTVIVALPGAVVLFERCSLVARQHAD---PATFXHPGQILLGLPHVRVDLV 50
           HP+ + +D    ++ALPG++  F   +++  Q AD    +T   P  +L  +P V    +
Sbjct: 136 HPICVNLDPTQPMLALPGSISAFHNATILDIQDADGFGASTSTGPTHVLAKVPLVYNFGL 195

Query: 49  HALLDSVQLF 20
            + LD+ +L+
Sbjct: 196 DSPLDNPKLY 205


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.9 bits (59), Expect = 0.27
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 65  DMREAEKNLSGMXKCCGICVLPC 133
           ++ EA KN S    C   CVLPC
Sbjct: 788 NLTEARKNFSNYRDCLENCVLPC 810


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.6 bits (56), Expect = 0.63
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 171 QVPSSSLNDAPLLQGSTQIPQHXSIPDRFFSASRMSALI 55
           +VP + ++D  L+ GST+IP+   +   FF    ++  I
Sbjct: 327 KVPKADVHDIVLVGGSTRIPKVQRLVSDFFDGRALNKSI 365


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 26.2 bits (55), Expect = 0.83
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 171 QVPSSSLNDAPLLQGSTQIPQHXSIPDRFFS 79
           ++  SS+N+  L+ GST+IP+   +   FF+
Sbjct: 323 KIDKSSVNEIVLVGGSTRIPRIQKLVSDFFN 353


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 133 ARQHADPATFXHPGQILLGLPHVRVDLVHALLDSVQLF 20
           +R H + AT+    Q L  LPH +VD    L+    L+
Sbjct: 273 SRVHTNAATYRVIIQTLQNLPHTKVDAAFGLVSLFILY 310


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 171 QVPSSSLNDAPLLQGSTQIPQHXSIPDRFFS 79
           +V  +S+N+  L+ GST+IP+   +   FF+
Sbjct: 323 KVDKASVNEIVLVGGSTRIPRVQKLVSDFFN 353


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 197 VNNQPQRVMDERNGIGPXAGYI 262
           V+N+P RV  E   + P +GYI
Sbjct: 196 VSNEPPRVTIENASLKPFSGYI 217


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -2

Query: 227 HPSPAAADC*PPY--RHRCPSRCRRPL*TMLPCCKAARRSRNIXPSRTDSSRPPA 69
           HPSPA     PP+      P  C+       PC   A R  +   SR  + RPP+
Sbjct: 232 HPSPATVTTLPPFMSMSTIPIPCK-----YKPCLNPACRFIHPTKSRNMTWRPPS 281


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 117  IPQHXSIPDRFFSASRMSALIWSMPSS 37
            +P +  IP  +FS  +  AL+ S+PSS
Sbjct: 2225 LPSNELIPMMYFSNPQEIALLLSLPSS 2251


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 98  SRTDSSRPPACPR*SGPCPP 39
           S+T S+ PP  P  S P PP
Sbjct: 133 SQTKSALPPNVPASSSPLPP 152


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 159 SSLNDAPLLQGSTQIPQHXSIPDRFF 82
           S ++D  L+ GST+IP+   + + FF
Sbjct: 359 SEIDDIVLVGGSTRIPKVQELLESFF 384


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 268 PPDISSXRADPIAFIHHP 215
           PPD+   + +PI F+  P
Sbjct: 33  PPDVKQNKTEPIPFVPKP 50


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 136 VARQHADPATFXHPGQILL 80
           V  QHAD   F HP  I L
Sbjct: 389 VVSQHADETPFIHPAAIEL 407


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +2

Query: 113 GICVLPCNKGASFKEDDGTWKGNDDGKVVNNQPQR---VMDERNGI 241
           G   LP +     KED+G+W+  D     N   ++     DER GI
Sbjct: 336 GEASLPSDVNHGVKEDEGSWQLIDIETAKNAMSRKDNPYNDERAGI 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,196,009
Number of Sequences: 5004
Number of extensions: 20949
Number of successful extensions: 59
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)