Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f13
(273 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5546| Best HMM Match : SNARE (HMM E-Value=0.57) 77 3e-15
SB_55311| Best HMM Match : SNARE (HMM E-Value=0.53) 77 3e-15
SB_48420| Best HMM Match : SNARE (HMM E-Value=0.022) 35 0.012
SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.58
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_9097| Best HMM Match : Pox_RNA_Pol_19 (HMM E-Value=3) 28 1.3
SB_53799| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_24970| Best HMM Match : COX5C (HMM E-Value=4.7) 27 1.8
SB_51250| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 27 3.1
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 27 3.1
SB_7840| Best HMM Match : S-antigen (HMM E-Value=0.11) 27 3.1
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 26 4.1
SB_40786| Best HMM Match : WSC (HMM E-Value=0.44) 26 4.1
SB_32156| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_22616| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7) 26 5.4
SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17) 26 5.4
SB_1471| Best HMM Match : Chromo (HMM E-Value=0.47) 26 5.4
SB_928| Best HMM Match : Antistasin (HMM E-Value=10) 25 7.2
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 25 7.2
SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08) 25 7.2
SB_57458| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 25 9.5
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 25 9.5
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_45658| Best HMM Match : Sushi (HMM E-Value=0) 25 9.5
SB_14513| Best HMM Match : rve (HMM E-Value=0.14) 25 9.5
>SB_5546| Best HMM Match : SNARE (HMM E-Value=0.57)
Length = 281
Score = 76.6 bits (180), Expect = 3e-15
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +2
Query: 17 GEQLDRIEEGMDQINADMREAEKNLSGMXKCCGICVLPCNK 139
GEQLDR+EEG+DQINADM+EAE+NL+GM KCCG+CV P K
Sbjct: 241 GEQLDRVEEGLDQINADMKEAERNLTGMEKCCGLCVCPWKK 281
>SB_55311| Best HMM Match : SNARE (HMM E-Value=0.53)
Length = 56
Score = 76.6 bits (180), Expect = 3e-15
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = +2
Query: 17 GEQLDRIEEGMDQINADMREAEKNLSGMXKCCGICVLPCNK 139
GEQLDR+EEG+DQINADM+EAE+NL+GM KCCG+CV P K
Sbjct: 16 GEQLDRVEEGLDQINADMKEAERNLTGMEKCCGLCVCPWKK 56
>SB_48420| Best HMM Match : SNARE (HMM E-Value=0.022)
Length = 215
Score = 34.7 bits (76), Expect = 0.012
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 17 GEQLDRIEEGMDQINADMREAEKNLSGMXKCCG 115
GEQLDR E+ +D I+ DM A +N+ M G
Sbjct: 72 GEQLDRTEKNLDHIHNDMAVANRNIKSMKSIWG 104
>SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 935
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 23 QLDRIEEGMDQINADMREAEKNLSGMXK 106
+L+RI+E D +NA +RE EK L + K
Sbjct: 240 ELERIKEERDALNAALREKEKQLLQLTK 267
>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 171 QVPSSSLNDAPLLQGSTQIPQHXSIPDRFFSASRMSALIWSMPSSIL 31
+VP SS+ AP+ +P S +R R +W++P S++
Sbjct: 198 KVPLSSIPTAPIRYRFQIVPLWRSFSNRSVFGYRFRVYVWTIPVSVI 244
>SB_9097| Best HMM Match : Pox_RNA_Pol_19 (HMM E-Value=3)
Length = 273
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 96 PDRFFSASRMSALIWSMPSSILSNCSPH 13
P+ +SR+S + WS+PSS+L S H
Sbjct: 173 PEVRLPSSRISDISWSIPSSVLGPGSKH 200
>SB_53799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 75 RPRRICPGWXNVAGSACCLATREHRSKRTTAPGRATMTVRWSTISRSG 218
R RR C +V AC A R HRS+ T PG +R S G
Sbjct: 568 RKRRKC----SVITCACFHALRRHRSRSVTIPGGIDYKIRAQAGSDKG 611
>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 92 TDSSRPPACPR*SGPCPPRFCP 27
+DS+ PP PR SG PP P
Sbjct: 322 SDSTNPPPSPRVSGAVPPLMLP 343
>SB_24970| Best HMM Match : COX5C (HMM E-Value=4.7)
Length = 158
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 122 RRSRNIXPSRTDSSRPPACPR*SGPCPPRFCPIVLL 15
RR +N+ PSRT+ C + P CP+ L+
Sbjct: 121 RRQKNLFPSRTEWLSTRMCLELTRKLPKTICPVRLM 156
>SB_51250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 179 CPSRCRRPL*TMLPCCKAARRSRNIXPSRTDSSR 78
C + + +LPCCK R++ P RT S+R
Sbjct: 289 CDEDYKHEIQALLPCCKPPESQRHL-PMRTPSTR 321
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 168 VPSSSLNDAPLLQGSTQIPQHXSIPDRFFSASRMSALIWSMPS 40
+P+ +L P+L S+ + + P F S S + WSM S
Sbjct: 981 MPTMNLTSVPILNTSSIVANLSATPISFASVSGSINITWSMSS 1023
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 44 GMDQINADMREAEK-NLSGMXKCCGICVLPCNKGASFK 154
G + IN D+ E L+G CC C C++G K
Sbjct: 528 GTEHINQDIFECRTCGLTGSLCCCTECARVCHRGHDCK 565
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 257 IQXAGRSHCVHPSPAAADC*PPYRHRCPSRCRRP 156
I GR +C H S A C R RC RC +P
Sbjct: 342 ISSTGRLYCPHTSRAEVLC--RRRPRCRCRCLKP 373
>SB_7840| Best HMM Match : S-antigen (HMM E-Value=0.11)
Length = 231
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 158 DDGTWKGNDDGKVVNNQPQRVMDERNGIGPXAGYIGRI 271
DD + +DDG V +N RV D+ G+G A IGR+
Sbjct: 82 DDADGRVSDDGGVGDNAEGRVSDD-GGVGDDA--IGRV 116
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 158 DDGTWKGNDDGKVVNNQPQRVMDERNGIGPXA 253
DD + +DDG V +N RV D+ G+G A
Sbjct: 180 DDANGRVSDDGGVGDNAEGRVSDD-GGVGDNA 210
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 223 HHPLRLIVDHLTVIVALPGAVVLFERC 143
HHP +I+ T+I+ P +VL++ C
Sbjct: 595 HHPCTIIIFVTTIIIFDPCLLVLYDVC 621
>SB_40786| Best HMM Match : WSC (HMM E-Value=0.44)
Length = 230
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 83 KNLSGMXKCCGICVLPCNKGASFKEDDGTWK 175
++ SGM + C +C L KG F + W+
Sbjct: 183 QDTSGMEQPCDLCGLNIGKGRLFTQGKNNWE 213
>SB_32156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 21 NNWTESRRAWTRSTRTCG 74
N + +RAWTRST++ G
Sbjct: 80 NKYPHYKRAWTRSTKSLG 97
>SB_22616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 171 QVPSSSLNDAPLLQGSTQIPQHXSIPDRFFSASRMSALIWSMPSSI 34
+VP SS+ AP+ +P S +R R +W++P S+
Sbjct: 55 KVPFSSVPTAPIGYRFQIVPLWRSFSNRSVFGYRFRVYVWTIPVSV 100
>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
Length = 332
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 174 FQVPSSSLNDAPLLQGSTQIPQHXSIP 94
FQVP ++ D P + S + PQH P
Sbjct: 194 FQVPLKAIADKPKMYYSKKAPQHSLSP 220
>SB_22411| Best HMM Match : Kinesin (HMM E-Value=6.8e-17)
Length = 505
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 194 PYRHRCPSRCRRPL*TMLPCCKAARRSRNIXPSRTDSSRPP 72
P R R R + P P AA RSR+ P+R+ +S PP
Sbjct: 302 PPRGRSLKRSKSPA----PGSAAAARSRSPSPARSSTSTPP 338
>SB_1471| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 236
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 22 TIGQNRGGHGPDQRGHAGGREESVRDGXMLRDLRAALQQGSI 147
T+ + GHG D GHA + S R L++ + + G I
Sbjct: 164 TVEGGKPGHGHDVTGHASLKAASSRLSAQLKNTELSQKHGLI 205
>SB_928| Best HMM Match : Antistasin (HMM E-Value=10)
Length = 334
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 51 TRSTRTCGRPRRICPGWXNVAGSAC 125
+R+ CG RR C G V +AC
Sbjct: 48 SRTVNKCGCRRRTCRGLHQVTSNAC 72
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 66 TCGRPRRICPGWXNVAGSACCLATREHRSKRTTAPG 173
+C PR + GS C+ TRE R +T++ G
Sbjct: 203 SCVNPREDGMNKTSSDGSGSCVNTREDRMNKTSSDG 238
>SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)
Length = 504
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 272 LSSRYIQXAGRSHCVHPSPAAADC 201
L S Y + +GRS C HPS C
Sbjct: 283 LYSNYGRTSGRSVCPHPSIRTTSC 306
>SB_57458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 40 GGHGPDQRGHAGGREESVRDG 102
GG GP + AGGR +DG
Sbjct: 105 GGRGPKNKEDAGGRGPENKDG 125
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = -1
Query: 159 SSLND-APLLQGSTQIPQHXSIPD 91
S++ND APLL+G+ +IP ++PD
Sbjct: 1275 SNVNDGAPLLEGN-KIPNENNVPD 1297
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 135 LQGSTQIPQHXSIPDRFFSASRMSALIWSMPS 40
L GST++ Q + DRF + SR+ I S S
Sbjct: 1468 LDGSTRVEQRQILMDRFNADSRIFCFILSTRS 1499
>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 140 GASFKEDDGTWKGNDDGKVVNNQPQRVMDERNGI 241
G+ ++ +G G+V+ N QR M+ER +
Sbjct: 523 GSDLRKREGAGGRKQKGRVMGNPAQRGMEEREAL 556
>SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 128 PCNKGASFKEDDGTWKGNDDGKVVNNQPQRVMDERNG 238
P N+ ++F TW+GN N+ D +NG
Sbjct: 69 PHNETSTFNSRFSTWRGNKKNLFANSSSIDPDDPKNG 105
>SB_45658| Best HMM Match : Sushi (HMM E-Value=0)
Length = 875
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 155 EDDGTWKGNDDGKVVNNQPQRVMDERN 235
+ DG WKGN +VV P V D N
Sbjct: 136 DKDGVWKGNFVCEVVKCPPPFVPDNGN 162
>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
Length = 1101
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 120 ACCLATREHRSKRTTAPGR-ATMTVRWST 203
AC H+S++ T PGR A RWS+
Sbjct: 624 ACAPKAYTHQSRKATLPGRPAGYRGRWSS 652
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,988,358
Number of Sequences: 59808
Number of extensions: 203399
Number of successful extensions: 664
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 67
effective length of database: 12,814,321
effective search space used: 294729383
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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