Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f13
         (273 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   4.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    20   6.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   6.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   8.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    19   8.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 133 ARQHADPATFXHPGQ 89
           AR + DP T+  P Q
Sbjct: 605 ARSYVDPHTYEDPNQ 619


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 72  GRPRRICPG 98
           G  RRICPG
Sbjct: 460 GAGRRICPG 468


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 155 EDDGTWKGNDDGKVVNNQPQRVM 223
           +DDG    +DD +  N +P   M
Sbjct: 394 DDDGDDDDDDDVEAANGKPAEGM 416


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 129 LATREHRSKRTT 164
           LATREH S+  T
Sbjct: 347 LATREHPSRNFT 358


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 20  EQLDRIEEGMDQINADM 70
           + +DR++  M Q+N +M
Sbjct: 479 DSVDRLDNLMAQVNTEM 495


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,075
Number of Sequences: 438
Number of extensions: 1759
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)