Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f12
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1826 - 40164306-40164355,40165019-40165095,40165796-401658...    48   7e-06
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51...    28   4.7  

>01_06_1826 -
           40164306-40164355,40165019-40165095,40165796-40165890,
           40166028-40166099,40166200-40166287,40166481-40166557
          Length = 152

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +3

Query: 183 QRLILSGDXXXXXXXXXXXXXXCGWRDQVRMLCRDIVKENESGNITFDSLVTKVTPRAR 359
           +RL+ SG+              CGWRD+++ LCR   ++    N+T D L+  +TP+ R
Sbjct: 78  KRLVESGEKEKLMELLRERLVECGWRDEMKALCRAYARKKGRNNVTVDDLIHVITPKGR 136


>01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-514521,
            514598-514736,514823-514923,514995-515666,515953-516038,
            516112-516777,516874-517128,517231-517358,518645-518799,
            518880-519133,519186-519260,519324-519399,519511-519644,
            519871-520153,520692-520850,520940-521038,521142-521310,
            521423-521653,522002-522114,524179-524310,524389-524469,
            525641-525763
          Length = 1570

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 279  CRDIVKENESGNITFDSLVTKVTPRARALVPDSVKKELLQ 398
            CR I+        T D L+ KV  + +A+  D +  +LLQ
Sbjct: 1353 CRSIIGTQSYVLFTLDKLIYKVVKQLQAIATDEMDNKLLQ 1392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,765,760
Number of Sequences: 37544
Number of extensions: 221254
Number of successful extensions: 372
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)