Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f12
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19134| Best HMM Match : Rab5ip (HMM E-Value=0)                      30   1.6  
SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 30   1.6  
SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_3195| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_19134| Best HMM Match : Rab5ip (HMM E-Value=0)
          Length = 150

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +3

Query: 360 ALVPDSVKKELLQKIKTHL 416
           ALVPD VK+ELLQ+I+  L
Sbjct: 128 ALVPDEVKRELLQRIRQFL 146


>SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1038

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 261 DQVRMLCRDIVKENESGNITFDSLVTKVTPRARALVPDSVKKELLQKI 404
           D++R   RD  K+ E+    ++ ++TK    A+       KKE+LQ+I
Sbjct: 141 DRLRRTYRDNAKDAENAQKRYEEVITKDKMNAKEWDKSKDKKEILQEI 188


>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 391 YCRKLKPIYSHRKTNKDKILIKFVLCYF 474
           +C + KPI+S+R+T K K+    V+C F
Sbjct: 129 HCHEFKPIHSNRRTRK-KLTTASVVCLF 155


>SB_3195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 40  ELLTLYCTICSHTSTAESY*KLGNRLEKYWKRSDIP 147
           E+LT YC  C   S  E+Y  L N  +K      +P
Sbjct: 100 EVLTTYCDNCERASVDEAYLDLTNSAQKKLSVMTVP 135


>SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1230

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 403 IFCNNSFFTESGTSALARGVTFVTKESNVMFPLSFSFTMSRHSIL 269
           +  N +F       +L++GVT  T+E+N++        MS HS++
Sbjct: 621 VLVNQAFIDTIHEHSLSQGVTEPTRENNILDLTEVLNGMSNHSVV 665


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,646,274
Number of Sequences: 59808
Number of extensions: 284258
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)