Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f12
         (581 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27100.1 68416.m03390 expressed protein                             69   2e-12
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    29   2.3  
At1g43640.1 68414.m05010 F-box family protein / tubby family pro...    27   6.9  
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam...    27   9.1  
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain...    27   9.1  

>At3g27100.1 68416.m03390 expressed protein
          Length = 115

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 32/90 (35%), Positives = 54/90 (60%)
 Frame = +3

Query: 153 KMTVNNTIAHQRLILSGDXXXXXXXXXXXXXXCGWRDQVRMLCRDIVKENESGNITFDSL 332
           K+T+   I + +L+ SG+              CGW+D++R+ CR+ VK+    ++T D L
Sbjct: 24  KVTLREII-NVKLVESGEKENLMELVRDRLVECGWKDEMRIACREHVKKKGRKDVTVDEL 82

Query: 333 VTKVTPRARALVPDSVKKELLQKIKTHLLT 422
           +  +TP+ RA VPDSVK ELL +I+  +++
Sbjct: 83  IRVITPKGRASVPDSVKAELLNRIQNFIVS 112


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles:  PF00271 helicase conserved
           C-terminal domain, PF01535 PPR repeat, PF00270:
           DEAD/DEAH box helicase
          Length = 1145

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 255 WRDQVRMLCRDIVKENESGNI-TFDSLVTKVTPRARALVPDSVKKELLQK 401
           W D  ++L RD++K   S N+ TF  L+       +    D + KE++Q+
Sbjct: 815 WDDGAKLL-RDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQR 863


>At1g43640.1 68414.m05010 F-box family protein / tubby family
           protein contains Pfam profile: PF01167: Tub family;
           contains Pfam PF00646: F-box domain; similar to Chain A,
           C-Terminal Domain Of Mouse Brain Tubby Protein
           Length(GI:6730158) [Mus musculus]; similar to Tubby
           related protein 1 (Tubby-like protein 1)
           (Swiss-Prot:O00294) [Homo sapiens]; similar to
           phosphodiesterase (GI:467578) [Mus musculus]
          Length = 429

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 270 RMLCRDIVKENE-SGNITFDSLVTKVTPR 353
           R++C+DIVK  E SG +TF   + +  PR
Sbjct: 94  RLMCKDIVKSPEFSGKLTFPVSLKQPGPR 122


>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 794

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -1

Query: 170 VIHSHFLAGMSLRFQYFSNLFPNF**LSAVEV*LQIVQYKVRSSQDSKINYPFV 9
           ++H   L     R QY  N+FP +     V V L +    +      ++NYPF+
Sbjct: 412 LVHIRGLTKSEGRHQYMENIFPLYSLFGFVAVHLFMYAADIYFWSRYRVNYPFI 465


>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
            protein low similarity to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1378

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 279  CRDIVKENESGNITFDSLVTKVTPRARALVPDSVKKELLQ 398
            CR I+        T D L+ ++  + +A+V D +  +LLQ
Sbjct: 1176 CRAIIGNQSYVLFTLDKLIYRLVKQLQAIVADEMDNKLLQ 1215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,049,509
Number of Sequences: 28952
Number of extensions: 204204
Number of successful extensions: 406
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)