BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11f12 (581 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g27100.1 68416.m03390 expressed protein 69 2e-12 At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 2.3 At1g43640.1 68414.m05010 F-box family protein / tubby family pro... 27 6.9 At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam... 27 9.1 At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 27 9.1 >At3g27100.1 68416.m03390 expressed protein Length = 115 Score = 68.9 bits (161), Expect = 2e-12 Identities = 32/90 (35%), Positives = 54/90 (60%) Frame = +3 Query: 153 KMTVNNTIAHQRLILSGDXXXXXXXXXXXXXXCGWRDQVRMLCRDIVKENESGNITFDSL 332 K+T+ I + +L+ SG+ CGW+D++R+ CR+ VK+ ++T D L Sbjct: 24 KVTLREII-NVKLVESGEKENLMELVRDRLVECGWKDEMRIACREHVKKKGRKDVTVDEL 82 Query: 333 VTKVTPRARALVPDSVKKELLQKIKTHLLT 422 + +TP+ RA VPDSVK ELL +I+ +++ Sbjct: 83 IRVITPKGRASVPDSVKAELLNRIQNFIVS 112 >At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein / pentatricopeptide (PPR) repeat-containing protein contains Pfam profiles: PF00271 helicase conserved C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH box helicase Length = 1145 Score = 29.1 bits (62), Expect = 2.3 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +3 Query: 255 WRDQVRMLCRDIVKENESGNI-TFDSLVTKVTPRARALVPDSVKKELLQK 401 W D ++L RD++K S N+ TF L+ + D + KE++Q+ Sbjct: 815 WDDGAKLL-RDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQR 863 >At1g43640.1 68414.m05010 F-box family protein / tubby family protein contains Pfam profile: PF01167: Tub family; contains Pfam PF00646: F-box domain; similar to Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length(GI:6730158) [Mus musculus]; similar to Tubby related protein 1 (Tubby-like protein 1) (Swiss-Prot:O00294) [Homo sapiens]; similar to phosphodiesterase (GI:467578) [Mus musculus] Length = 429 Score = 27.5 bits (58), Expect = 6.9 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = +3 Query: 270 RMLCRDIVKENE-SGNITFDSLVTKVTPR 353 R++C+DIVK E SG +TF + + PR Sbjct: 94 RLMCKDIVKSPEFSGKLTFPVSLKQPGPR 122 >At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family protein similar to PHO1 protein [Arabidopsis thaliana] GI:20069032; contains Pfam profiles PF03105: SPX domain, PF03124: EXS family Length = 794 Score = 27.1 bits (57), Expect = 9.1 Identities = 15/54 (27%), Positives = 24/54 (44%) Frame = -1 Query: 170 VIHSHFLAGMSLRFQYFSNLFPNF**LSAVEV*LQIVQYKVRSSQDSKINYPFV 9 ++H L R QY N+FP + V V L + + ++NYPF+ Sbjct: 412 LVHIRGLTKSEGRHQYMENIFPLYSLFGFVAVHLFMYAADIYFWSRYRVNYPFI 465 >At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing protein low similarity to transcription co-repressor Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile PF02671: Paired amphipathic helix repeat Length = 1378 Score = 27.1 bits (57), Expect = 9.1 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +3 Query: 279 CRDIVKENESGNITFDSLVTKVTPRARALVPDSVKKELLQ 398 CR I+ T D L+ ++ + +A+V D + +LLQ Sbjct: 1176 CRAIIGNQSYVLFTLDKLIYRLVKQLQAIVADEMDNKLLQ 1215 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,049,509 Number of Sequences: 28952 Number of extensions: 204204 Number of successful extensions: 406 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 403 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 406 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1141585696 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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