BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11f11 (692 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 180 8e-46 At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 180 8e-46 At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 177 8e-45 At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 177 8e-45 At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 177 8e-45 At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 173 7e-44 At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 105 2e-23 At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 30 1.7 At3g52860.1 68416.m05825 expressed protein 30 1.7 At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1... 29 2.9 At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1... 29 2.9 At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 28 6.8 At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con... 28 6.8 At4g05590.1 68417.m00864 expressed protein contains Pfam domain,... 27 8.9 At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 8.9 >At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) Length = 247 Score = 180 bits (438), Expect = 8e-46 Identities = 85/156 (54%), Positives = 112/156 (71%) Frame = +3 Query: 183 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 362 VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72 Query: 363 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 542 +A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132 Query: 543 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 650 R EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI + Sbjct: 133 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIAL 168 >At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) Length = 242 Score = 180 bits (438), Expect = 8e-46 Identities = 85/156 (54%), Positives = 112/156 (71%) Frame = +3 Query: 183 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 362 VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67 Query: 363 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 542 +A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127 Query: 543 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 650 R EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI + Sbjct: 128 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIAL 163 >At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from [Arabidopsis thaliana] Length = 244 Score = 177 bits (430), Expect = 8e-45 Identities = 85/160 (53%), Positives = 113/160 (70%) Frame = +3 Query: 162 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 341 +++ VPESVLK Q + +K++ IF RA+QY KEY+ KER Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62 Query: 342 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 521 + I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122 Query: 522 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQR 641 KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162 >At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from [Arabidopsis thaliana] Length = 244 Score = 177 bits (430), Expect = 8e-45 Identities = 85/160 (53%), Positives = 113/160 (70%) Frame = +3 Query: 162 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 341 +++ VPESVLK Q + +K++ IF RA+QY KEY+ KER Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62 Query: 342 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 521 + I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122 Query: 522 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQR 641 KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162 >At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from [Arabidopsis thaliana] Length = 244 Score = 177 bits (430), Expect = 8e-45 Identities = 85/160 (53%), Positives = 113/160 (70%) Frame = +3 Query: 162 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 341 +++ VPESVLK Q + +K++ IF RA+QY KEY+ KER Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62 Query: 342 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 521 + I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122 Query: 522 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQR 641 KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162 >At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) Length = 242 Score = 173 bits (422), Expect = 7e-44 Identities = 84/156 (53%), Positives = 110/156 (70%) Frame = +3 Query: 183 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 362 VPESVLK Q + + ++ IFKRAEQY KEY KE++ I L R Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67 Query: 363 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 542 +A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKAT+NML Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127 Query: 543 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 650 R EPY+ +G+PNLKSV+EL+YKRG+ KL+ QRI + Sbjct: 128 RRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIAL 163 >At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo sapiens] Length = 247 Score = 105 bits (253), Expect = 2e-23 Identities = 54/165 (32%), Positives = 89/165 (53%) Frame = +3 Query: 156 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 335 +E++K L +PE VLK + S KKK KR E +V E+R K Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62 Query: 336 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVR 515 E D IR+ ++ + + P ++ L F+IRI+G N + PK +++L +L+ + GVF + Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122 Query: 516 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 650 + L +PY+ +GYPN KSV++L+YK+G + G +P+ Sbjct: 123 ATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPL 167 >At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus subtilis}; contains Pfam profile PF01406: tRNA synthetases class I (C) Length = 511 Score = 29.9 bits (64), Expect = 1.7 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Frame = +1 Query: 181 LYQSQCSSIVRGERLFALG---DYRLR*RGVLLPSRRRGKSSRGLNSTSRNTASRNVMKS 351 + + C +V G+ F++ +Y + G LL R G+ ++S RN A + K+ Sbjct: 134 IIEKDCGYVVEGDVFFSVDKSPNYG-KLSGQLLEHTRAGERV-AVDSRKRNPADFALWKA 191 Query: 352 D*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKF 468 PD+ + + PG+P WH+ ++ H S KF Sbjct: 192 AKPDEPSWESPWG-PGRPGWHIECSAM---SVHYLSPKF 226 >At3g52860.1 68416.m05825 expressed protein Length = 156 Score = 29.9 bits (64), Expect = 1.7 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +3 Query: 240 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 350 ++ LK + IKK +F+ +++ VKE K RDE+ Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153 >At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1) contains Pfam profile: PF00249 Myb-like DNA-binding domain Length = 634 Score = 29.1 bits (62), Expect = 2.9 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +1 Query: 361 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 483 DK VA T F G NWH S+ V + ++ NCLD Sbjct: 341 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 380 >At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1) contains Pfam profile: PF00249 Myb-like DNA-binding domain Length = 847 Score = 29.1 bits (62), Expect = 2.9 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +1 Query: 361 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 483 DK VA T F G NWH S+ V + ++ NCLD Sbjct: 554 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 593 >At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative contains Pfam domain PF01851: Proteasome/cyclosome repeat Length = 1103 Score = 27.9 bits (59), Expect = 6.8 Identities = 14/46 (30%), Positives = 28/46 (60%) Frame = -2 Query: 553 SAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMT 416 S R FT++ F+R N+ + I+R+ C TL + ++W+ +I+ + Sbjct: 1059 SVPRKWFTISPFKRKNSFIAIYRNF-LCTTLISHSKSWISFQIQFS 1103 >At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to beta-glucosidase (GI:757740) [Brassica napus]; similar to beta-glucosidase GB:AAB64244 from [Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68 (1997)) Length = 527 Score = 27.9 bits (59), Expect = 6.8 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = +2 Query: 389 RSRGSQIGICHPNPWYQPSFTEG 457 + +G +IGI H W++P EG Sbjct: 263 KCKGGKIGIAHSPAWFEPEDVEG 285 >At4g05590.1 68417.m00864 expressed protein contains Pfam domain, PF03650: Uncharacterized protein family (UPF0041) Length = 108 Score = 27.5 bits (58), Expect = 8.9 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = -1 Query: 686 LWSLFSTMLLEVNWYTLSTQLGES-TFVY*LT 594 +WS +ST++ NW S LG + T +Y LT Sbjct: 59 VWSRYSTVITPKNWNLFSVSLGMAVTGIYQLT 90 >At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 1696 Score = 27.5 bits (58), Expect = 8.9 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +1 Query: 301 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHR 453 G + T R+ +R + SD K+ V+ T GK HLS E VS F R Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRR 454 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,822,872 Number of Sequences: 28952 Number of extensions: 267545 Number of successful extensions: 650 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 641 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 650 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1477286152 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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