Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f11
(692 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 180 8e-46
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 180 8e-46
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 177 8e-45
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 177 8e-45
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 177 8e-45
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 173 7e-44
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 105 2e-23
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 30 1.7
At3g52860.1 68416.m05825 expressed protein 30 1.7
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1... 29 2.9
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1... 29 2.9
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 28 6.8
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con... 28 6.8
At4g05590.1 68417.m00864 expressed protein contains Pfam domain,... 27 8.9
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 8.9
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 180 bits (438), Expect = 8e-46
Identities = 85/156 (54%), Positives = 112/156 (71%)
Frame = +3
Query: 183 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 362
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72
Query: 363 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 542
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 73 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132
Query: 543 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 650
R EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +
Sbjct: 133 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIAL 168
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 180 bits (438), Expect = 8e-46
Identities = 85/156 (54%), Positives = 112/156 (71%)
Frame = +3
Query: 183 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 362
VPESVLK + + +++ ++ IFKRAEQY KEY K+ + IRL R
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 363 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 542
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127
Query: 543 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 650
R EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +
Sbjct: 128 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIAL 163
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 177 bits (430), Expect = 8e-45
Identities = 85/160 (53%), Positives = 113/160 (70%)
Frame = +3
Query: 162 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 341
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 342 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 521
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 522 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQR 641
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 177 bits (430), Expect = 8e-45
Identities = 85/160 (53%), Positives = 113/160 (70%)
Frame = +3
Query: 162 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 341
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 342 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 521
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 522 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQR 641
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 177 bits (430), Expect = 8e-45
Identities = 85/160 (53%), Positives = 113/160 (70%)
Frame = +3
Query: 162 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 341
+++ VPESVLK Q + +K++ IF RA+QY KEY+ KER
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62
Query: 342 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 521
+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63 ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122
Query: 522 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQR 641
KAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 173 bits (422), Expect = 7e-44
Identities = 84/156 (53%), Positives = 110/156 (70%)
Frame = +3
Query: 183 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 362
VPESVLK Q + + ++ IFKRAEQY KEY KE++ I L R
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 363 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 542
+A+ +G +YV EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127
Query: 543 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 650
R EPY+ +G+PNLKSV+EL+YKRG+ KL+ QRI +
Sbjct: 128 RRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIAL 163
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 105 bits (253), Expect = 2e-23
Identities = 54/165 (32%), Positives = 89/165 (53%)
Frame = +3
Query: 156 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 335
+E++K L +PE VLK + S KKK KR E +V E+R K
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62
Query: 336 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVR 515
E D IR+ ++ + + P ++ L F+IRI+G N + PK +++L +L+ + GVF +
Sbjct: 63 EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122
Query: 516 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 650
+ L +PY+ +GYPN KSV++L+YK+G + G +P+
Sbjct: 123 ATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPL 167
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 29.9 bits (64), Expect = 1.7
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +1
Query: 181 LYQSQCSSIVRGERLFALG---DYRLR*RGVLLPSRRRGKSSRGLNSTSRNTASRNVMKS 351
+ + C +V G+ F++ +Y + G LL R G+ ++S RN A + K+
Sbjct: 134 IIEKDCGYVVEGDVFFSVDKSPNYG-KLSGQLLEHTRAGERV-AVDSRKRNPADFALWKA 191
Query: 352 D*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKF 468
PD+ + + PG+P WH+ ++ H S KF
Sbjct: 192 AKPDEPSWESPWG-PGRPGWHIECSAM---SVHYLSPKF 226
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 240 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 350
++ LK + IKK +F+ +++ VKE K RDE+
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 634
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 361 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 483
DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 341 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 380
>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 847
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 361 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 483
DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 554 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 593
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
contains Pfam domain PF01851: Proteasome/cyclosome repeat
Length = 1103
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = -2
Query: 553 SAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMT 416
S R FT++ F+R N+ + I+R+ C TL + ++W+ +I+ +
Sbjct: 1059 SVPRKWFTISPFKRKNSFIAIYRNF-LCTTLISHSKSWISFQIQFS 1103
>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:757740) [Brassica
napus]; similar to beta-glucosidase GB:AAB64244 from
[Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
(1997))
Length = 527
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 389 RSRGSQIGICHPNPWYQPSFTEG 457
+ +G +IGI H W++P EG
Sbjct: 263 KCKGGKIGIAHSPAWFEPEDVEG 285
>At4g05590.1 68417.m00864 expressed protein contains Pfam domain,
PF03650: Uncharacterized protein family (UPF0041)
Length = 108
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 686 LWSLFSTMLLEVNWYTLSTQLGES-TFVY*LT 594
+WS +ST++ NW S LG + T +Y LT
Sbjct: 59 VWSRYSTVITPKNWNLFSVSLGMAVTGIYQLT 90
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +1
Query: 301 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHR 453
G + T R+ +R + SD K+ V+ T GK HLS E VS F R
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRR 454
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,822,872
Number of Sequences: 28952
Number of extensions: 267545
Number of successful extensions: 650
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -