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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f11
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)             180   8e-46
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)             180   8e-46
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila...   177   8e-45
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila...   177   8e-45
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila...   177   8e-45
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)             173   7e-44
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila...   105   2e-23
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot...    30   1.7  
At3g52860.1 68416.m05825 expressed protein                             30   1.7  
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1...    29   2.9  
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1...    29   2.9  
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    28   6.8  
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con...    28   6.8  
At4g05590.1 68417.m00864 expressed protein contains Pfam domain,...    27   8.9  
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    27   8.9  

>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 
          Length = 247

 Score =  180 bits (438), Expect = 8e-46
 Identities = 85/156 (54%), Positives = 112/156 (71%)
 Frame = +3

Query: 183 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 362
           VPESVLK                +  +  +++ ++ IFKRAEQY KEY  K+ + IRL R
Sbjct: 13  VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 72

Query: 363 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 542
           +A+ +G +YV  EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 73  EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 132

Query: 543 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 650
           R  EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +
Sbjct: 133 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIAL 168


>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 
          Length = 242

 Score =  180 bits (438), Expect = 8e-46
 Identities = 85/156 (54%), Positives = 112/156 (71%)
 Frame = +3

Query: 183 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 362
           VPESVLK                +  +  +++ ++ IFKRAEQY KEY  K+ + IRL R
Sbjct: 8   VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67

Query: 363 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 542
           +A+ +G +YV  EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKATVNML
Sbjct: 68  EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127

Query: 543 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 650
           R  EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +
Sbjct: 128 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIAL 163


>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score =  177 bits (430), Expect = 8e-45
 Identities = 85/160 (53%), Positives = 113/160 (70%)
 Frame = +3

Query: 162 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 341
           +++    VPESVLK             Q     +    +K++ IF RA+QY KEY+ KER
Sbjct: 3   EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62

Query: 342 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 521
           + I+L R+A+ +G +YV  EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63  ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122

Query: 522 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQR 641
           KAT+NMLR  EPY+ +GYPNLKSV+EL+YKRGF KL+ QR
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162


>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score =  177 bits (430), Expect = 8e-45
 Identities = 85/160 (53%), Positives = 113/160 (70%)
 Frame = +3

Query: 162 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 341
           +++    VPESVLK             Q     +    +K++ IF RA+QY KEY+ KER
Sbjct: 3   EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62

Query: 342 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 521
           + I+L R+A+ +G +YV  EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63  ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122

Query: 522 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQR 641
           KAT+NMLR  EPY+ +GYPNLKSV+EL+YKRGF KL+ QR
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162


>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
           to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
           [Arabidopsis thaliana]
          Length = 244

 Score =  177 bits (430), Expect = 8e-45
 Identities = 85/160 (53%), Positives = 113/160 (70%)
 Frame = +3

Query: 162 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 341
           +++    VPESVLK             Q     +    +K++ IF RA+QY KEY+ KER
Sbjct: 3   EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKER 62

Query: 342 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLN 521
           + I+L R+A+ +G +YV  EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++N
Sbjct: 63  ELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVN 122

Query: 522 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQR 641
           KAT+NMLR  EPY+ +GYPNLKSV+EL+YKRGF KL+ QR
Sbjct: 123 KATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQR 162


>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
          Length = 242

 Score =  173 bits (422), Expect = 7e-44
 Identities = 84/156 (53%), Positives = 110/156 (70%)
 Frame = +3

Query: 183 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 362
           VPESVLK             Q     +    + ++ IFKRAEQY KEY  KE++ I L R
Sbjct: 8   VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67

Query: 363 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 542
           +A+ +G +YV  EAKL F+IRIRGIN + PK +K+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 68  EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127

Query: 543 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 650
           R  EPY+ +G+PNLKSV+EL+YKRG+ KL+ QRI +
Sbjct: 128 RRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIAL 163


>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
           to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
           sapiens]
          Length = 247

 Score =  105 bits (253), Expect = 2e-23
 Identities = 54/165 (32%), Positives = 89/165 (53%)
 Frame = +3

Query: 156 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 335
           +E++K L  +PE VLK             +      S   KKK    KR E +V E+R K
Sbjct: 3   EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAK 62

Query: 336 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVR 515
           E D IR+ ++ +   +   P ++ L F+IRI+G N + PK +++L   +L+ +  GVF +
Sbjct: 63  EVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAK 122

Query: 516 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPI 650
              +    L   +PY+ +GYPN KSV++L+YK+G   + G  +P+
Sbjct: 123 ATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPL 167


>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
           similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
           6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
           subtilis}; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 511

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
 Frame = +1

Query: 181 LYQSQCSSIVRGERLFALG---DYRLR*RGVLLPSRRRGKSSRGLNSTSRNTASRNVMKS 351
           + +  C  +V G+  F++    +Y  +  G LL   R G+    ++S  RN A   + K+
Sbjct: 134 IIEKDCGYVVEGDVFFSVDKSPNYG-KLSGQLLEHTRAGERV-AVDSRKRNPADFALWKA 191

Query: 352 D*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKF 468
             PD+ +  +    PG+P WH+   ++     H  S KF
Sbjct: 192 AKPDEPSWESPWG-PGRPGWHIECSAM---SVHYLSPKF 226


>At3g52860.1 68416.m05825 expressed protein 
          Length = 156

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 240 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 350
           ++  LK +   IKK   +F+ +++ VKE   K RDE+
Sbjct: 117 MEEELKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153


>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 634

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 361 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 483
           DK   VA T F G  NWH  S+ V      +   ++ NCLD
Sbjct: 341 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 380


>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 847

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 361 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 483
           DK   VA T F G  NWH  S+ V      +   ++ NCLD
Sbjct: 554 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 593


>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
            contains Pfam domain PF01851: Proteasome/cyclosome repeat
          Length = 1103

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = -2

Query: 553  SAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMT 416
            S  R  FT++ F+R N+ + I+R+   C TL +  ++W+  +I+ +
Sbjct: 1059 SVPRKWFTISPFKRKNSFIAIYRNF-LCTTLISHSKSWISFQIQFS 1103


>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase (GI:757740) [Brassica
           napus]; similar to beta-glucosidase GB:AAB64244 from
           [Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
           (1997))
          Length = 527

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 389 RSRGSQIGICHPNPWYQPSFTEG 457
           + +G +IGI H   W++P   EG
Sbjct: 263 KCKGGKIGIAHSPAWFEPEDVEG 285


>At4g05590.1 68417.m00864 expressed protein contains Pfam domain,
           PF03650: Uncharacterized protein family (UPF0041)
          Length = 108

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 686 LWSLFSTMLLEVNWYTLSTQLGES-TFVY*LT 594
           +WS +ST++   NW   S  LG + T +Y LT
Sbjct: 59  VWSRYSTVITPKNWNLFSVSLGMAVTGIYQLT 90


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +1

Query: 301 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHR 453
           G + T R+  +R  + SD   K+  V+ T   GK   HLS E  VS  F R
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRR 454


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,822,872
Number of Sequences: 28952
Number of extensions: 267545
Number of successful extensions: 650
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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