BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11f10 (738 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 89 3e-18 01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833... 38 0.008 06_01_0784 - 5868545-5868888,5868990-5869085,5870313-5870394,587... 37 0.015 08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151 33 0.31 06_01_0187 + 1458802-1458895,1459004-1459464,1459551-1459648,146... 31 1.3 04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 31 1.3 09_06_0194 - 21469815-21470117,21470226-21470376,21470463-214707... 30 2.2 03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 30 2.2 10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 29 2.9 06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136... 29 2.9 09_02_0448 - 9458463-9459752 29 3.9 07_03_1605 - 28093235-28094031,28094887-28094974 29 3.9 03_03_0262 + 15968884-15969687 29 3.9 12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 29 5.1 03_05_0361 - 23448459-23448910,23448990-23449406,23449542-234497... 28 6.7 08_02_0189 + 13984892-13984943,13985929-13986480,13986577-139867... 28 8.9 >02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690, 9508416-9508458,9508853-9508860 Length = 228 Score = 89.4 bits (212), Expect = 3e-18 Identities = 37/51 (72%), Positives = 42/51 (82%) Frame = +1 Query: 46 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID 198 MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q LID Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLID 51 >01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504, 8330703-8330975,8331107-8331181,8331269-8331325, 8331409-8331549,8331656-8331706,8331795-8331944, 8331974-8332057,8332171-8332273,8332451-8332527, 8333469-8333704,8334000-8334078,8335123-8335218, 8335735-8335828,8336325-8336423,8336663-8337453 Length = 871 Score = 37.9 bits (84), Expect = 0.008 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +1 Query: 40 LKMPKYYCDYCDTYLTHDSPSVRKTHCTGRKH 135 + + KYYCDYC+ D+P+ RK H G +H Sbjct: 449 MPLGKYYCDYCEKQF-QDTPAARKRHLDGAQH 479 >06_01_0784 - 5868545-5868888,5868990-5869085,5870313-5870394, 5870639-5870839,5871810-5871818 Length = 243 Score = 37.1 bits (82), Expect = 0.015 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = +1 Query: 58 YCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 147 +CD+C Y+ ++ S+R TH G++HKDNV Sbjct: 12 WCDFCKIYIANNPLSIR-THEIGKRHKDNV 40 >08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151 Length = 124 Score = 32.7 bits (71), Expect = 0.31 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +1 Query: 46 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 150 M ++YC +CD Y S SV++ H ++HK +K Sbjct: 61 MGQFYCLHCDRYFA--SESVKEEHYRSKRHKKRIK 93 >06_01_0187 + 1458802-1458895,1459004-1459464,1459551-1459648, 1460918-1461487,1461534-1461822,1461904-1462086, 1462204-1462824 Length = 771 Score = 30.7 bits (66), Expect = 1.3 Identities = 8/24 (33%), Positives = 15/24 (62%) Frame = -1 Query: 291 YRRIPRWWYCSAFVAKWILSNFAC 220 Y+++P WW+ S +A ++ F C Sbjct: 444 YKQVPEWWFISILIASVAITMFTC 467 >04_04_0198 + 23502657-23502900,23505228-23505298,23505690-23505727, 23505905-23507693 Length = 713 Score = 30.7 bits (66), Expect = 1.3 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +1 Query: 193 IDATTAAFKAGKIAQNPFGNKGTAIPPPWDP 285 +DAT A G IA P G +G PPP P Sbjct: 524 VDATVVAAAGGGIAIGPLGEEGLVGPPPPPP 554 >09_06_0194 - 21469815-21470117,21470226-21470376,21470463-21470700, 21470784-21470991,21471107-21471309,21471407-21471508, 21471622-21472945 Length = 842 Score = 29.9 bits (64), Expect = 2.2 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 1/60 (1%) Frame = +3 Query: 210 GIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSR-YDTSSIYGSWRSYGTT 386 G + C+ + + C TRR PT C W D + SW G T Sbjct: 374 GNMNAGECAAACRRNCSCVAYAYADLSRSTRRDPTRCLMWGGELLDMEKVNESWGDLGET 433 >03_02_1035 - 13557425-13557721,13557855-13558058,13558143-13558332, 13558450-13558841,13558931-13559023,13559297-13559500, 13559572-13559635,13559760-13559806,13559825-13559971, 13560243-13560335,13560420-13560599,13560993-13561128, 13561216-13561466,13561556-13561669,13561794-13561991, 13562050-13562110,13562921-13563210 Length = 986 Score = 29.9 bits (64), Expect = 2.2 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Frame = +1 Query: 22 LGC*CFLKMPKYYCDYCDTYLTHDSPSVRKTH--CTGRKHKDNVKFYYQKWMEEQAQHLI 195 +GC K+ +Y CD L D P VRKT C + + N + + E + LI Sbjct: 200 MGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLEALKDLI 259 Query: 196 DATTAAFKAGKIA 234 A +A Sbjct: 260 SDNNPMVVANAVA 272 >10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975, 8507746-8508330 Length = 421 Score = 29.5 bits (63), Expect = 2.9 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +1 Query: 61 CDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 150 C+ C + D+P V + H TG+KHK N++ Sbjct: 280 CEVCK--IQCDTPEVLRIHKTGKKHKKNLE 307 >06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470, 1365551-1366120,1367066-1367178,1367344-1367816, 1367906-1367984 Length = 763 Score = 29.5 bits (63), Expect = 2.9 Identities = 8/24 (33%), Positives = 15/24 (62%) Frame = -1 Query: 291 YRRIPRWWYCSAFVAKWILSNFAC 220 Y+++P WW+ +A ++ FAC Sbjct: 437 YKQVPEWWFVCILIANIAVTIFAC 460 >09_02_0448 - 9458463-9459752 Length = 429 Score = 29.1 bits (62), Expect = 3.9 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -3 Query: 184 VLVPPSISDNKTSHCLYVFF 125 V++PP I D K SHCL VFF Sbjct: 146 VVIPP-IPDKKYSHCLAVFF 164 >07_03_1605 - 28093235-28094031,28094887-28094974 Length = 294 Score = 29.1 bits (62), Expect = 3.9 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Frame = +3 Query: 288 GNGTRRT---PTSCTR-WSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNETAYDGP 452 GNGTR T P+SCT+ WS + +++ G GTT S + N +E+ D P Sbjct: 87 GNGTRHTVFGPSSCTQSWSHQAAAAAMGGK----GTTGSRSSISLCSDNYDSESEVDDP 141 >03_03_0262 + 15968884-15969687 Length = 267 Score = 29.1 bits (62), Expect = 3.9 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -1 Query: 252 VAKWILSNFACFECRCCCIDEML 184 V W+ SN C CRC IDE L Sbjct: 119 VDMWLRSNSTCPLCRCAVIDEAL 141 >12_02_0522 - 19960092-19960595,19962737-19962880,19963042-19963131, 19963215-19963320,19963400-19963574,19963849-19963951, 19964382-19964636,19964726-19964803,19964908-19965000, 19965091-19965222,19965898-19966002,19966127-19966201, 19966284-19966340,19966419-19966532,19966613-19966756, 19966886-19966969,19967071-19967164,19967244-19967369, 19967507-19967580,19967672-19967875,19968234-19968388, 19968860-19968947,19969505-19969730,19970235-19970286, 19970766-19970958,19973221-19973314,19973744-19973788, 19974874-19974896 Length = 1210 Score = 28.7 bits (61), Expect = 5.1 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = +3 Query: 168 DGGTSTTSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTR 326 + G HR + I+ S S W +RHCN T L ++ G C+R Sbjct: 175 EAGALVPIHRLKSLRIRRSTPPSSSSWWRRHCNRTPL-TWPLGVYIVSVQCSR 226 >03_05_0361 - 23448459-23448910,23448990-23449406,23449542-23449735, 23449854-23449902,23450155-23450539,23450578-23450874, 23451650-23451961 Length = 701 Score = 28.3 bits (60), Expect = 6.7 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%) Frame = +3 Query: 279 GSFGNGTRRTPTSCTRWSSRYDTSSIYGS------WRSYGTTNDDGSTWANAANDGNETA 440 G G G P +C+ +R+ S++ S W + T DGS+W++ +G T+ Sbjct: 310 GQQGYGGGVPPPTCSGGHTRFGASALLISNACSLNWYLWNHTMSDGSSWSSDGTEGQYTS 369 >08_02_0189 + 13984892-13984943,13985929-13986480,13986577-13986759, 13986826-13987006,13987238-13987654,13987742-13988128, 13988176-13988467 Length = 687 Score = 27.9 bits (59), Expect = 8.9 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%) Frame = +1 Query: 100 SVRKTHCTGRKHKDNVKFYYQKWMEE----QAQHL 192 S HC H N K+YY+ W+EE QA H+ Sbjct: 448 STTPLHCLA--HSLNPKYYYETWLEEAPNRQAPHM 480 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,630,705 Number of Sequences: 37544 Number of extensions: 315333 Number of successful extensions: 966 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 939 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 964 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1945321620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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