Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f10
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 7e-23
SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05) 32 0.56
SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086) 31 0.74
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 31 1.3
SB_33483| Best HMM Match : TSP_1 (HMM E-Value=0) 31 1.3
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3) 30 2.3
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44) 29 3.9
SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_42232| Best HMM Match : zf-C2HC (HMM E-Value=8.3) 28 6.9
SB_38380| Best HMM Match : PIR (HMM E-Value=0.56) 28 6.9
SB_52750| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_20541| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 84.6 bits (200), Expect(2) = 7e-23
Identities = 39/60 (65%), Positives = 45/60 (75%)
Frame = +1
Query: 97 PSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGNKGTAIPPP 276
PSVRKTH GRKHK+NV+FYYQKWMEEQAQ LID TTAAF++ +Q P +PPP
Sbjct: 160 PSVRKTHNNGRKHKENVRFYYQKWMEEQAQTLIDQTTAAFQSKPNSQMPPNAPPGLMPPP 219
Score = 40.7 bits (91), Expect(2) = 7e-23
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 52 KYYCDYCDTYLTHDSPSV 105
+YYCDYCDT+LTHDS S+
Sbjct: 111 RYYCDYCDTFLTHDSNSL 128
>SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)
Length = 681
Score = 31.9 bits (69), Expect = 0.56
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 171 GGTSTTSHRCNNSGIQSRQNCSKSIWQQRHCN 266
GG S H+ +N ++S + + S+W++RHC+
Sbjct: 633 GGASFEYHKPDNHALESDPDPNLSVWKRRHCS 664
>SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086)
Length = 502
Score = 31.5 bits (68), Expect = 0.74
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 49 PKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 147
P+Y+C+ CD+ H +++ H G KH+ NV
Sbjct: 278 PRYHCELCDSKFDH---NLKFPHLVGAKHRFNV 307
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 43 KMPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVK 150
KM +YYC CD ++ +S + H T +H+D +K
Sbjct: 778 KMGQYYCQDCD--ISMNSIKQMEQHMTSARHRDGLK 811
>SB_33483| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 372
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 171 GGTSTTSHRCNNSGIQ-SRQNCSKSIWQQRHCNTTTLGSFGNGTRRTP-TSCT 323
GGT C N Q +NC+ S Q R CNT GN ++ + TSCT
Sbjct: 197 GGTQVRLRSCTNPEPQYGGKNCTGSYKQIRECNTQPCPVDGNYSQWSEWTSCT 249
>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
Length = 531
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 297 TRRTPTSCTRWSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNET 437
T PT+ T ++ Y+TS Y + Y T ND ++ + ND T
Sbjct: 56 TTTAPTTTTTPNNDYNTSDDYSTNNDYSTNNDYSTSDEYSTNDDYNT 102
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 198 IDEMLCLFLHPFLIIKLHIVFMFSSCAVSFPYTR*IMCEVS 76
+ E +CL L F I LH V +S +S P I C+VS
Sbjct: 153 VAEQMCLVLECFKIGSLHFVLHETSKEISLPDRVAIFCDVS 193
>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
Length = 2581
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 79 YLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQ 180
YL DS V + + T K +VKF+Y+K +E++
Sbjct: 2150 YLHTDSSKVLQMNATVAKRSMDVKFFYEKGIEQK 2183
>SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1540
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 76 TYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWME 174
TY + +RK CTG H D + YYQ+ E
Sbjct: 522 TYSDRSTSQLRK--CTGLYHSDRIVHYYQRTRE 552
>SB_42232| Best HMM Match : zf-C2HC (HMM E-Value=8.3)
Length = 123
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 76 TYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWME 174
TY + +RK CTG H D++ YYQ+ E
Sbjct: 31 TYSDRSTRQLRK--CTGLYHSDHIVHYYQRTRE 61
>SB_38380| Best HMM Match : PIR (HMM E-Value=0.56)
Length = 339
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 76 TYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWME 174
TY + +RK CTG H D++ YYQ+ E
Sbjct: 31 TYSDRSTRQLRK--CTGLYHSDHIVHYYQRTRE 61
>SB_52750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 186 TSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSC 320
T H C + + +K ++ + +T+ +G+ NG +RT C
Sbjct: 40 TRHTCGVRNMNNGNKRTKVLYNTQTRHTSGVGNMNNGNKRTKVLC 84
>SB_20541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 76 TYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWME 174
TY + +RK CTG H D + YYQ+ E
Sbjct: 31 TYSDRSTRQLRK--CTGLYHSDRIVHYYQRTRE 61
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 279 GSFGNGTRR---TPTSCTRWSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNET 437
G+ GNGT T S T S T+S G+ S GTT+ G+T + + G T
Sbjct: 510 GATGNGTSSNGGTTGSSTTSSGESGTTSTGGNTGS-GTTSSGGNTGSGTTSSGGNT 564
>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +3
Query: 180 STTSHRCNNSGIQSRQNCSKSIWQQRHCNTTTLGSFGNGTRRTPTSCTRWSSRYDTSSIY 359
+T S C N+ +R N S + NT+T S + +C S TSS
Sbjct: 199 NTISSTCANTCANTRSNTSANTRANTCSNTSTYTSTNTRANTSSNTCADTRSNTSTSSYT 258
Query: 360 GS 365
G+
Sbjct: 259 GT 260
>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1726
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 56 ITVIIVILTSHMIHLV*GKLTAQEENIKTM*SFIIRNGWRNKHNI-SSMQQQRHSKQAKL 232
I +I+V++ M+ L+ + A +E K +R++HNI SS Q KQ L
Sbjct: 6 IVIILVMMVFEMLMLLTMMMVALDETKKE---------FRDQHNIFSSKQSTSEQKQDAL 56
Query: 233 LKIHLATKALQYHHLGILR 289
+ ++ L YH+ G+ +
Sbjct: 57 MDLN-RLSTLLYHYTGLAK 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,445,574
Number of Sequences: 59808
Number of extensions: 379308
Number of successful extensions: 1426
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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