Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f10
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.2  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 551 TDAELLCINLKTKC 592
           +DAEL+C+   TKC
Sbjct: 288 SDAELICVTTGTKC 301


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 103 VRKTHCTGRKHKDNVK 150
           +R THC      DN++
Sbjct: 409 IRNTHCVNNNQNDNIQ 424


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 198 CNNSGIQSRQNCSKSIWQQRHCNT 269
           CN S   S  +C   I  QRH +T
Sbjct: 374 CNISPRSSADSCQVGIMAQRHRDT 397


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 291 NGTRRTPTSCTRWSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNETA 440
           NG+ R+P S +R S + +   I  S+ S  T N   +T     +  ++T+
Sbjct: 320 NGSPRSPESNSRCSVKREKIKISVSYPSTETLNTKCNTLERTPSKCSQTS 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,831
Number of Sequences: 438
Number of extensions: 3470
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)