Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f10
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g03120.1 68417.m00425 proline-rich family protein similar to ... 90 1e-18
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro... 33 0.20
At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ... 31 1.1
At2g19385.1 68415.m02261 expressed protein weak similarity to Ce... 31 1.1
At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro... 29 4.3
At4g23460.1 68417.m03381 beta-adaptin, putative strong similarit... 29 4.3
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit... 29 4.3
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain... 28 5.6
At3g13730.1 68416.m01733 cytochrome P450, putative similar to Cy... 28 7.4
At1g30835.1 68414.m03770 expressed protein 28 7.4
At5g53520.1 68418.m06651 oligopeptide transporter OPT family pro... 27 9.8
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 27 9.8
>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
small nuclear ribonucleoprotein C; contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 207
Score = 90.2 bits (214), Expect = 1e-18
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = +1
Query: 46 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID 198
MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q LID
Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLID 51
>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe};
contains Pfam profile PF03169: OPT oligopeptide
transporter protein
Length = 753
Score = 33.1 bits (72), Expect = 0.20
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = -1
Query: 294 HYRRIPRWWYCSAFVAKWILSNFAC 220
+Y+ +P+WW+ + A ++L+ +AC
Sbjct: 425 NYKEVPQWWFVAVLAASFVLALYAC 449
>At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type,
domain; weak similarity to Zinc finger protein T86
(Swiss-Prot:O00488) [Homo sapiens]
Length = 198
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 46 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 147
M ++YC +CD Y + + SVR H +KHK V
Sbjct: 55 MGQFYCLHCDRYFS--NVSVRDDHFKTKKHKKRV 86
>At2g19385.1 68415.m02261 expressed protein weak similarity to Cell
growth regulating nucleolar protein (Swiss-Prot:Q08288)
[Mus musculus]
Length = 275
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 55 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHL 192
++C C+T T S H G+KH+ K ++ + +EQ+ L
Sbjct: 95 WFCSLCNTKAT--SQQTLLAHADGKKHRGKAKAFHARQQQEQSTTL 138
>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe},
oligopeptide transporter Opt1p [Candida albicans]
GI:2367386; contains Pfam profile PF03169: OPT
oligopeptide transporter protein
Length = 755
Score = 28.7 bits (61), Expect = 4.3
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = -1
Query: 294 HYRRIPRWWYCSAFVAKWILSNFAC 220
+Y+ +P+WW+ + V + + +AC
Sbjct: 427 NYQSVPQWWFIAVLVISFAFALYAC 451
>At4g23460.1 68417.m03381 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 893
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = +1
Query: 22 LGC*CFLKMPKYYCDYCDTYLTHDSPSVRKTH--CTGRKHKDNVKFYYQKWMEEQAQHLI 195
+GC K+ +Y CD L D P VRKT C + N + + E + LI
Sbjct: 112 MGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLEALKDLI 171
Query: 196 DATTAAFKAGKIA 234
A +A
Sbjct: 172 SDNNPMVVANAVA 184
>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 894
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = +1
Query: 22 LGC*CFLKMPKYYCDYCDTYLTHDSPSVRKTH--CTGRKHKDNVKFYYQKWMEEQAQHLI 195
+GC K+ +Y CD L D P VRKT C + N + + E + LI
Sbjct: 112 MGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLEALKDLI 171
Query: 196 DATTAAFKAGKIA 234
A +A
Sbjct: 172 SDNNPMVVANAVA 184
>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain B, Crystal Structure Of N-Terminal Domain Of
Drosophila Ap180 (GP:13399617) [Drosophila
melanogaster]; supporting cDNA
gi|20465326|gb|AY096427.1|
Length = 601
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 214 FKAGKIAQNPFGNKGTAIPPP 276
F AG NPFG+ A+PPP
Sbjct: 565 FSAGPSPSNPFGDAFLALPPP 585
>At3g13730.1 68416.m01733 cytochrome P450, putative similar to
Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
[Arabidopsis thaliana]; identical to CYP90D
(GI:14971017) [Arabidopsis thaliana]
Length = 491
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 246 WQQRHCNTTTLGSFGNGTRRTP 311
WQ+R NT++ FG G R P
Sbjct: 422 WQERDMNTSSFSPFGGGQRLCP 443
>At1g30835.1 68414.m03770 expressed protein
Length = 132
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 76 TYLTHDSP-SVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGN 252
T+ + D P + K++ T R K+ K+ KWM Q HL+ + + ++ I+ G
Sbjct: 66 TFNSTDEPLNHSKSNHTFRSDKEEAKYGGIKWMLAQTNHLL--SRSGQRSPAISHLGSGQ 123
Query: 253 KGTAIP 270
+ TA P
Sbjct: 124 RSTANP 129
>At5g53520.1 68418.m06651 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe},
oligopeptide transporter Opt1p [Candida albicans]
GI:2367386; contains Pfam profile PF03169: OPT
oligopeptide transporter protein
Length = 733
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -1
Query: 294 HYRRIPRWWYCSAFVAKWILSNFAC 220
+Y+ +P WW+ S F + F C
Sbjct: 407 NYKEVPLWWFLSIFAVNLAVIVFIC 431
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +1
Query: 55 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID 198
++C C+ T + +H GRKH++NV+ + ++ + +D
Sbjct: 224 WFCSLCNVKATCQQNLL--SHANGRKHRENVELFDATQQQQLEKTTVD 269
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,603,355
Number of Sequences: 28952
Number of extensions: 259918
Number of successful extensions: 774
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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