BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11f10 (738 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g03120.1 68417.m00425 proline-rich family protein similar to ... 90 1e-18 At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro... 33 0.20 At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ... 31 1.1 At2g19385.1 68415.m02261 expressed protein weak similarity to Ce... 31 1.1 At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro... 29 4.3 At4g23460.1 68417.m03381 beta-adaptin, putative strong similarit... 29 4.3 At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit... 29 4.3 At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain... 28 5.6 At3g13730.1 68416.m01733 cytochrome P450, putative similar to Cy... 28 7.4 At1g30835.1 68414.m03770 expressed protein 28 7.4 At5g53520.1 68418.m06651 oligopeptide transporter OPT family pro... 27 9.8 At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 27 9.8 >At4g03120.1 68417.m00425 proline-rich family protein similar to U1 small nuclear ribonucleoprotein C; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 207 Score = 90.2 bits (214), Expect = 1e-18 Identities = 37/51 (72%), Positives = 42/51 (82%) Frame = +1 Query: 46 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID 198 MP+YYCDYCDTYLTHDSPSVRK H G KHK NV+ YYQ++ E+Q Q LID Sbjct: 1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLID 51 >At4g26590.1 68417.m03833 oligopeptide transporter OPT family protein similar to SP|P40900 Sexual differentiation process protein isp4 {Schizosaccharomyces pombe}; contains Pfam profile PF03169: OPT oligopeptide transporter protein Length = 753 Score = 33.1 bits (72), Expect = 0.20 Identities = 8/25 (32%), Positives = 18/25 (72%) Frame = -1 Query: 294 HYRRIPRWWYCSAFVAKWILSNFAC 220 +Y+ +P+WW+ + A ++L+ +AC Sbjct: 425 NYKEVPQWWFVAVLAASFVLALYAC 449 >At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein contains Prosite PS00028: Zinc finger, C2H2 type, domain; weak similarity to Zinc finger protein T86 (Swiss-Prot:O00488) [Homo sapiens] Length = 198 Score = 30.7 bits (66), Expect = 1.1 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 46 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 147 M ++YC +CD Y + + SVR H +KHK V Sbjct: 55 MGQFYCLHCDRYFS--NVSVRDDHFKTKKHKKRV 86 >At2g19385.1 68415.m02261 expressed protein weak similarity to Cell growth regulating nucleolar protein (Swiss-Prot:Q08288) [Mus musculus] Length = 275 Score = 30.7 bits (66), Expect = 1.1 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = +1 Query: 55 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHL 192 ++C C+T T S H G+KH+ K ++ + +EQ+ L Sbjct: 95 WFCSLCNTKAT--SQQTLLAHADGKKHRGKAKAFHARQQQEQSTTL 138 >At5g55930.1 68418.m06976 oligopeptide transporter OPT family protein similar to SP|P40900 Sexual differentiation process protein isp4 {Schizosaccharomyces pombe}, oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein Length = 755 Score = 28.7 bits (61), Expect = 4.3 Identities = 7/25 (28%), Positives = 16/25 (64%) Frame = -1 Query: 294 HYRRIPRWWYCSAFVAKWILSNFAC 220 +Y+ +P+WW+ + V + + +AC Sbjct: 427 NYQSVPQWWFIAVLVISFAFALYAC 451 >At4g23460.1 68417.m03381 beta-adaptin, putative strong similarity to SP|Q10567 Adapter-related protein complex 1 beta 1 subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin [Drosophila melanogaster] GI:434902; contains Pfam profile: PF01602 Adaptin N terminal region Length = 893 Score = 28.7 bits (61), Expect = 4.3 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Frame = +1 Query: 22 LGC*CFLKMPKYYCDYCDTYLTHDSPSVRKTH--CTGRKHKDNVKFYYQKWMEEQAQHLI 195 +GC K+ +Y CD L D P VRKT C + N + + E + LI Sbjct: 112 MGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLEALKDLI 171 Query: 196 DATTAAFKAGKIA 234 A +A Sbjct: 172 SDNNPMVVANAVA 184 >At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity to SP|Q10567 Adapter-related protein complex 1 beta 1 subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin [Drosophila melanogaster] GI:434902; contains Pfam profile: PF01602 Adaptin N terminal region Length = 894 Score = 28.7 bits (61), Expect = 4.3 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Frame = +1 Query: 22 LGC*CFLKMPKYYCDYCDTYLTHDSPSVRKTH--CTGRKHKDNVKFYYQKWMEEQAQHLI 195 +GC K+ +Y CD L D P VRKT C + N + + E + LI Sbjct: 112 MGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLEALKDLI 171 Query: 196 DATTAAFKAGKIA 234 A +A Sbjct: 172 SDNNPMVVANAVA 184 >At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain-containing protein contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain; similar to Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180 (GP:13399617) [Drosophila melanogaster]; supporting cDNA gi|20465326|gb|AY096427.1| Length = 601 Score = 28.3 bits (60), Expect = 5.6 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 214 FKAGKIAQNPFGNKGTAIPPP 276 F AG NPFG+ A+PPP Sbjct: 565 FSAGPSPSNPFGDAFLALPPP 585 >At3g13730.1 68416.m01733 cytochrome P450, putative similar to Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066) [Arabidopsis thaliana]; identical to CYP90D (GI:14971017) [Arabidopsis thaliana] Length = 491 Score = 27.9 bits (59), Expect = 7.4 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 Query: 246 WQQRHCNTTTLGSFGNGTRRTP 311 WQ+R NT++ FG G R P Sbjct: 422 WQERDMNTSSFSPFGGGQRLCP 443 >At1g30835.1 68414.m03770 expressed protein Length = 132 Score = 27.9 bits (59), Expect = 7.4 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +1 Query: 76 TYLTHDSP-SVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGN 252 T+ + D P + K++ T R K+ K+ KWM Q HL+ + + ++ I+ G Sbjct: 66 TFNSTDEPLNHSKSNHTFRSDKEEAKYGGIKWMLAQTNHLL--SRSGQRSPAISHLGSGQ 123 Query: 253 KGTAIP 270 + TA P Sbjct: 124 RSTANP 129 >At5g53520.1 68418.m06651 oligopeptide transporter OPT family protein similar to SP|P40900 Sexual differentiation process protein isp4 {Schizosaccharomyces pombe}, oligopeptide transporter Opt1p [Candida albicans] GI:2367386; contains Pfam profile PF03169: OPT oligopeptide transporter protein Length = 733 Score = 27.5 bits (58), Expect = 9.8 Identities = 8/25 (32%), Positives = 13/25 (52%) Frame = -1 Query: 294 HYRRIPRWWYCSAFVAKWILSNFAC 220 +Y+ +P WW+ S F + F C Sbjct: 407 NYKEVPLWWFLSIFAVNLAVIVFIC 431 >At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); contains Pfam profile PF00096: Zinc finger, C2H2 type Length = 613 Score = 27.5 bits (58), Expect = 9.8 Identities = 11/48 (22%), Positives = 24/48 (50%) Frame = +1 Query: 55 YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID 198 ++C C+ T + +H GRKH++NV+ + ++ + +D Sbjct: 224 WFCSLCNVKATCQQNLL--SHANGRKHRENVELFDATQQQQLEKTTVD 269 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,603,355 Number of Sequences: 28952 Number of extensions: 259918 Number of successful extensions: 774 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 761 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 774 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1624036432 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -