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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f10
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03120.1 68417.m00425 proline-rich family protein similar to ...    90   1e-18
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro...    33   0.20 
At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ...    31   1.1  
At2g19385.1 68415.m02261 expressed protein weak similarity to Ce...    31   1.1  
At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro...    29   4.3  
At4g23460.1 68417.m03381 beta-adaptin, putative strong similarit...    29   4.3  
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit...    29   4.3  
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain...    28   5.6  
At3g13730.1 68416.m01733 cytochrome P450, putative similar to Cy...    28   7.4  
At1g30835.1 68414.m03770 expressed protein                             28   7.4  
At5g53520.1 68418.m06651 oligopeptide transporter OPT family pro...    27   9.8  
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ...    27   9.8  

>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
           small nuclear ribonucleoprotein C; contains proline rich
           extensin domains, INTERPRO:IPR002965
          Length = 207

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = +1

Query: 46  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID 198
           MP+YYCDYCDTYLTHDSPSVRK H  G KHK NV+ YYQ++ E+Q Q LID
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLID 51


>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 753

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 294 HYRRIPRWWYCSAFVAKWILSNFAC 220
           +Y+ +P+WW+ +   A ++L+ +AC
Sbjct: 425 NYKEVPQWWFVAVLAASFVLALYAC 449


>At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type,
           domain; weak similarity to Zinc finger protein T86
           (Swiss-Prot:O00488) [Homo sapiens]
          Length = 198

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 46  MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHKDNV 147
           M ++YC +CD Y +  + SVR  H   +KHK  V
Sbjct: 55  MGQFYCLHCDRYFS--NVSVRDDHFKTKKHKKRV 86


>At2g19385.1 68415.m02261 expressed protein weak similarity to Cell
           growth regulating nucleolar protein (Swiss-Prot:Q08288)
           [Mus musculus]
          Length = 275

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 55  YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHL 192
           ++C  C+T  T  S      H  G+KH+   K ++ +  +EQ+  L
Sbjct: 95  WFCSLCNTKAT--SQQTLLAHADGKKHRGKAKAFHARQQQEQSTTL 138


>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 755

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -1

Query: 294 HYRRIPRWWYCSAFVAKWILSNFAC 220
           +Y+ +P+WW+ +  V  +  + +AC
Sbjct: 427 NYQSVPQWWFIAVLVISFAFALYAC 451


>At4g23460.1 68417.m03381 beta-adaptin, putative strong similarity
           to SP|Q10567 Adapter-related protein complex 1 beta 1
           subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
           [Drosophila melanogaster] GI:434902; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 893

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
 Frame = +1

Query: 22  LGC*CFLKMPKYYCDYCDTYLTHDSPSVRKTH--CTGRKHKDNVKFYYQKWMEEQAQHLI 195
           +GC    K+ +Y CD     L  D P VRKT   C  +    N +    +   E  + LI
Sbjct: 112 MGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLEALKDLI 171

Query: 196 DATTAAFKAGKIA 234
                   A  +A
Sbjct: 172 SDNNPMVVANAVA 184


>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
           to SP|Q10567 Adapter-related protein complex 1 beta 1
           subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
           [Drosophila melanogaster] GI:434902; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 894

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
 Frame = +1

Query: 22  LGC*CFLKMPKYYCDYCDTYLTHDSPSVRKTH--CTGRKHKDNVKFYYQKWMEEQAQHLI 195
           +GC    K+ +Y CD     L  D P VRKT   C  +    N +    +   E  + LI
Sbjct: 112 MGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLEALKDLI 171

Query: 196 DATTAAFKAGKIA 234
                   A  +A
Sbjct: 172 SDNNPMVVANAVA 184


>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to  Chain B, Crystal Structure Of N-Terminal Domain Of
           Drosophila Ap180 (GP:13399617) [Drosophila
           melanogaster]; supporting cDNA
           gi|20465326|gb|AY096427.1|
          Length = 601

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 214 FKAGKIAQNPFGNKGTAIPPP 276
           F AG    NPFG+   A+PPP
Sbjct: 565 FSAGPSPSNPFGDAFLALPPP 585


>At3g13730.1 68416.m01733 cytochrome P450, putative similar to
           Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
           [Arabidopsis thaliana]; identical to CYP90D
           (GI:14971017) [Arabidopsis thaliana]
          Length = 491

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 246 WQQRHCNTTTLGSFGNGTRRTP 311
           WQ+R  NT++   FG G R  P
Sbjct: 422 WQERDMNTSSFSPFGGGQRLCP 443


>At1g30835.1 68414.m03770 expressed protein
          Length = 132

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 76  TYLTHDSP-SVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFGN 252
           T+ + D P +  K++ T R  K+  K+   KWM  Q  HL+  + +  ++  I+    G 
Sbjct: 66  TFNSTDEPLNHSKSNHTFRSDKEEAKYGGIKWMLAQTNHLL--SRSGQRSPAISHLGSGQ 123

Query: 253 KGTAIP 270
           + TA P
Sbjct: 124 RSTANP 129


>At5g53520.1 68418.m06651 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 733

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 294 HYRRIPRWWYCSAFVAKWILSNFAC 220
           +Y+ +P WW+ S F     +  F C
Sbjct: 407 NYKEVPLWWFLSIFAVNLAVIVFIC 431


>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM); contains Pfam profile PF00096:
           Zinc finger, C2H2 type
          Length = 613

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +1

Query: 55  YYCDYCDTYLTHDSPSVRKTHCTGRKHKDNVKFYYQKWMEEQAQHLID 198
           ++C  C+   T     +  +H  GRKH++NV+ +     ++  +  +D
Sbjct: 224 WFCSLCNVKATCQQNLL--SHANGRKHRENVELFDATQQQQLEKTTVD 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,603,355
Number of Sequences: 28952
Number of extensions: 259918
Number of successful extensions: 774
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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