Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11f09
(665 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.) 143 1e-34
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 114 5e-26
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0) 99 2e-21
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 1e-16
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1) 55 5e-08
SB_56184| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16) 33 0.16
SB_51365| Best HMM Match : ig (HMM E-Value=0.00037) 29 4.5
SB_57472| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2) 28 5.9
SB_46434| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 143 bits (346), Expect = 1e-34
Identities = 79/188 (42%), Positives = 113/188 (60%), Gaps = 13/188 (6%)
Frame = +3
Query: 138 SLKMNNGRDMPAIGLGTYLGFDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASVYETEQE 317
++K+NNG +MP +GLGT+ KSK Q+ + V AI GYRH D A Y E+E
Sbjct: 3 TVKLNNGLEMPVLGLGTW---------KSKPGQVENAVKFAIKEGYRHIDCAYAYRNEKE 53
Query: 318 IGEAVKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPI 497
+G+A++ ++ VV+R+D+FIT+KLWNT+H +V DSLK LGLDY+DLYL+HWP+
Sbjct: 54 VGDALR-ELLGSVVERKDLFITSKLWNTKHNPKDVRSNCVDSLKDLGLDYLDLYLIHWPL 112
Query: 498 GL-------------NADYSHSDVDFMETWRGLEDAQRMGIVKGIGLSNFNKQQLERVLK 638
N Y++ D +TW+ +E G+VK IGLSNFN +Q++ +
Sbjct: 113 SFRDGDEFFPKDEQGNVLYAYHDP--CDTWKAMEKLVDEGLVKAIGLSNFNSKQVDDICA 170
Query: 639 EGTIKPDA 662
IKP A
Sbjct: 171 IARIKPVA 178
>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 407
Score = 114 bits (275), Expect = 5e-26
Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 11/157 (7%)
Frame = +3
Query: 219 KSKDKQLRDVVMRAIDVGYRHFDTASVYETEQEIGEAVKMKVEEGVVKREDIFITTKLWN 398
+S +++ + V AI++GYRH D A +Y E EIGEA+ + EG VKRE++F+T+KLW
Sbjct: 61 QSSKEEVGNAVRLAIELGYRHIDCAEIYGNEGEIGEALSEVLTEGKVKREELFVTSKLWC 120
Query: 399 TQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPI----GLNADYS-------HSDVDFMET 545
H +V A +LK L LDY+DLYL+H P+ G+ +S ++ T
Sbjct: 121 DSHHPDDVLPACQATLKNLQLDYLDLYLIHIPVAFKKGVRLPHSIAEGIIGYTPEGVQNT 180
Query: 546 WRGLEDAQRMGIVKGIGLSNFNKQQLERVLKEGTIKP 656
W+ +E G+ K IG+SNF+ ++L ++L+ +I P
Sbjct: 181 WQAMEGLVAKGLCKAIGVSNFSVKRLNKLLETASIVP 217
>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
Length = 333
Score = 99 bits (238), Expect = 2e-21
Identities = 58/170 (34%), Positives = 93/170 (54%)
Frame = +3
Query: 147 MNNGRDMPAIGLGTYLGFDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASVYETEQEIGE 326
MN+GR +P +GLG + D + V+ A++ GYR DTAS Y EQ +GE
Sbjct: 70 MNDGRKIPLLGLGAH------------DIHSKQAVLWALESGYRLIDTASRYHNEQSVGE 117
Query: 327 AVKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPIGLN 506
AV+ + R +I++ TK++ T+H E A SL +LGL Y+DLYL+H+P+
Sbjct: 118 AVRCSN----IPRCEIYVVTKVYFTEHGYKETMDAFYKSLTRLGLGYVDLYLIHFPVPSG 173
Query: 507 ADYSHSDVDFMETWRGLEDAQRMGIVKGIGLSNFNKQQLERVLKEGTIKP 656
+ +W+ + D + G+++ IG+SNFN Q LE + ++ + P
Sbjct: 174 V---------VGSWQAMIDLRSRGLIRSIGVSNFNIQHLEALRQQTGVVP 214
>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 83.4 bits (197), Expect = 1e-16
Identities = 46/138 (33%), Positives = 76/138 (55%)
Frame = +3
Query: 243 DVVMRAIDVGYRHFDTASVYETEQEIGEAVKMKVEEGVVKREDIFITTKLWNTQHRRTEV 422
DV + A+ GYR DTA +Y+ E+E+G AV+ + +KREDI++TTKL ++ +
Sbjct: 48 DVCLFALKNGYRMLDTADIYQNEKEVGSAVR----KSGLKREDIYVTTKLKPSEEGHSNA 103
Query: 423 AQAINDSLKKLGLDYIDLYLMHWPIGLNADYSHSDVDFMETWRGLEDAQRMGIVKGIGLS 602
+ +S+KKL + Y+DL+L+H P N + + L + G+++ +G+S
Sbjct: 104 LKYAKESIKKLDIGYVDLFLIHTPRPGN---------IIAAYDALLTLKEEGLIRSVGVS 154
Query: 603 NFNKQQLERVLKEGTIKP 656
NF LE + K G P
Sbjct: 155 NFGVHHLEELRKAGCRTP 172
>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 77.0 bits (181), Expect = 1e-14
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 6/177 (3%)
Frame = +3
Query: 153 NGRDMPAIGLGTY-LGFDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASVYE-TEQEIGE 326
+G MP +G GT LG D VVK+ A++ GYR DTA Y +E ++ +
Sbjct: 333 SGYTMPVMGFGTATLGEDTLSVVKT-----------ALETGYRLIDTAQGYPLSEPQVAK 381
Query: 327 AVKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPIG-- 500
A+ + G+ R+DIFI TKL +++ SL+ L DYIDL+L+H
Sbjct: 382 AI---ADSGI-PRKDIFIITKLHPRYLGYEPTLKSVEMSLRALSTDYIDLFLIHSKTCDD 437
Query: 501 --LNADYSHSDVDFMETWRGLEDAQRMGIVKGIGLSNFNKQQLERVLKEGTIKPDAI 665
L + E+W+ +E+ R G ++ +G+SNFN +L+ ++ T+ A+
Sbjct: 438 FLLTCAEGEPRGTWKESWKAMEELHRQGKIRSLGVSNFNVDELQELVNFATVPVSAV 494
>SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)
Length = 93
Score = 55.2 bits (127), Expect = 5e-08
Identities = 31/103 (30%), Positives = 55/103 (53%)
Frame = +3
Query: 147 MNNGRDMPAIGLGTYLGFDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASVYETEQEIGE 326
+++G +P GLG Y +K + V+ A++ GYR DTA+ Y E+ +GE
Sbjct: 3 LSDGYKIPRFGLGLY---------DLDEKHTKQAVLWALENGYRMIDTAASYNNEKRVGE 53
Query: 327 AVKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKL 455
A++ E V R ++++ TK+++T H + +A + SL L
Sbjct: 54 ALR----ESAVPRSEVYLVTKVYHTDHGYEKTMKAYDRSLSAL 92
>SB_56184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/78 (24%), Positives = 40/78 (51%)
Frame = +3
Query: 411 RTEVAQAINDSLKKLGLDYIDLYLMHWPIGLNADYSHSDVDFMETWRGLEDAQRMGIVKG 590
R V +I S+K++ +D +D+ HW + +SD +++ L + Q G ++
Sbjct: 3 RKVVEASIQKSMKRMAVDKLDMVQFHW-------WDYSDKRYLDALLHLSELQSEGKIQE 55
Query: 591 IGLSNFNKQQLERVLKEG 644
I L+NF+ +++ + G
Sbjct: 56 ISLTNFDTNRMQEITDHG 73
>SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16)
Length = 195
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +3
Query: 441 SLKKLGLDYIDLYLMHW 491
SL++LG+D IDLYL+HW
Sbjct: 51 SLERLGIDRIDLYLLHW 67
>SB_51365| Best HMM Match : ig (HMM E-Value=0.00037)
Length = 498
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +3
Query: 420 VAQAINDSLKKLGLDYIDLYLMHWPIGLNADYSHSDVDFMETWRGLEDAQRMGIVKGIGL 599
V + +N SLK++ D +D++ +H P D+ E+ + ++ + G K GL
Sbjct: 339 VLEQMNTSLKRMKRDKVDIFYLHAP-----DHK---TPIEESLKAVDQLHKEGKFKEFGL 390
Query: 600 SNF 608
SN+
Sbjct: 391 SNY 393
>SB_57472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 532 TSWRPGEDWKMLSEWV*LKASDCLTSTSSSWR 627
++W G+ W++L +W K SD S SWR
Sbjct: 270 SAWSKGQSWRLLGQWA-NKVSD--WSKGQSWR 298
>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 267
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -2
Query: 367 SLLTTPSSTFIFTASPISCSVS*TEAVSK*RYPTSMARITTSRSCLSLDFTTPF*SNPRY 188
S +TPS T + + +C+ S T S TS T+ S TT + SNP Y
Sbjct: 190 SYTSTPSYT---STTSYTCTTSYTSTTSY-TCTTSYTSTTSYTPTTSYTSTTSYTSNPSY 245
Query: 187 VPRP 176
P P
Sbjct: 246 TPTP 249
>SB_46434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 294 RRYRNDGIRHLWRALQHHGAACPWTSLRRSDQTQGTCPGRWRAC 163
R R GIR + + HG A PW R ++ P +W+ C
Sbjct: 678 RNPRRTGIRQMEKIFCLHGGAIPW----RRNKAINQRPQKWQRC 717
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,162,657
Number of Sequences: 59808
Number of extensions: 415048
Number of successful extensions: 1277
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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