Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f08
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    28   1.2  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    26   4.8  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   6.3  

>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 424 LLSVAADHAVCFWRGNV*GWRRADEFERHVGT 519
           L+S + D+++CFWR +   W    + + H  T
Sbjct: 438 LVSGSYDNSICFWRDDGDDWALTCQLQGHTNT 469


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 356 CRVNEMPRLKYASVVRVVVILGLFCLWLQI 445
           C V ++P+L   S  R + IL +FCL  Q+
Sbjct: 336 CSVEDLPKLVQLSPKRDLYILRVFCLAEQL 365


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 544 LGGDQG*HLFRRVV-RIHQLFSIPIHSP 464
           + G QG H  R     IH LF++P +SP
Sbjct: 741 ISGSQGLHYKRLTTDMIHNLFNVPSNSP 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,451
Number of Sequences: 5004
Number of extensions: 43304
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)