Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11f08
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0839 + 21916842-21917852,21917944-21919602                       32   0.40 
11_04_0374 + 16923063-16923176,16923214-16923363,16923547-16924101     29   2.8  
01_06_0097 + 26413647-26415101                                         29   3.7  
12_02_0326 + 17555731-17556387                                         28   4.9  
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917     28   4.9  
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982...    28   6.5  
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    28   6.5  
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756...    27   8.6  
02_01_0640 + 4796079-4797032,4797269-4797934                           27   8.6  

>07_03_0839 + 21916842-21917852,21917944-21919602
          Length = 889

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 557 DTCAARGGPGLALVPTCRSN--SSALLHPYTF 468
           D C ARGG G A  P  R+     ++LHPY F
Sbjct: 68  DVCGARGGDGAARPPLFRTYKVKGSILHPYRF 99


>11_04_0374 + 16923063-16923176,16923214-16923363,16923547-16924101
          Length = 272

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 208 YVTLIKLNRILDLIIGKRKHGVGELKRCHNSVQRHLLSA 324
           ++T+I +  I+D I GK ++   E+K C N   R LL A
Sbjct: 229 FITIIPITHIIDGIAGKVQNPTAEMKVC-NVFTRRLLCA 266


>01_06_0097 + 26413647-26415101
          Length = 484

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 395 PKHT*AVASRSLDRWRCTHLSFVSAD-NRWRCTELWHLFNS 276
           P HT A   RS D      L F+  D   WRC E W L+ +
Sbjct: 122 PPHTEAAPPRSADG---PQLHFLDGDPGVWRCDEAWKLYEA 159


>12_02_0326 + 17555731-17556387
          Length = 218

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 481 IPIHSPARSRQH-DLQPQTEEPEYDDNTHDRSILEPWHLVHSTDGAALILVSFPR 320
           IPI   +RSR+   LQP   +PE++++ +D +   P       D   L   +FPR
Sbjct: 60  IPITPASRSRKPLHLQPHHPKPEHEEDDNDHNPSNPASADADADDLVL-AAAFPR 113


>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
          Length = 447

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 469 SPARSRQHDLQPQTEEPEYDDNTHDRSILEPWHLVHSTD 353
           SP  S   D   +T    YDD +   +   PWH  H++D
Sbjct: 266 SPTPSALTDASARTYSGRYDDFSFSTARNSPWHHHHASD 304


>10_06_0029 +
           9822216-9823124,9825210-9825329,9826188-9826304,
           9826387-9826476,9826706-9826756
          Length = 428

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 529 PGPPRAAQVSDGAPEELKCQLHR 597
           P PP A++ +D     L C LHR
Sbjct: 133 PSPPPASKATDALARSLDCSLHR 155


>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 484 SIPIHSPARSRQHDLQPQTEEPEYDDNTHDRS 389
           S P ++P+R+R  D   Q    +Y  + H+RS
Sbjct: 385 SDPRYTPSRTRDEDAHKQHSSRDYSHSKHERS 416


>06_03_1344 -
           29472139-29473292,29474478-29475386,29475504-29475618,
           29476017-29476218,29477177-29477296,29477431-29477582,
           29478177-29478461
          Length = 978

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 454 RQHDLQPQTEEPEYDDNTHDRSILEPWH 371
           R  D +  TE   Y+ N H R++   WH
Sbjct: 563 RSRDKREYTESRPYESNKHSRTLKVNWH 590


>02_01_0640 + 4796079-4797032,4797269-4797934
          Length = 539

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 389 ASVVRVVVILGLFCLWLQIMLSASGGG 469
           A VV VVV++    LW+++  S  GGG
Sbjct: 6   ACVVAVVVVVVFAMLWVKLARSGDGGG 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,992,696
Number of Sequences: 37544
Number of extensions: 295808
Number of successful extensions: 883
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)